DreINT0023190 @ danRer10
Intron Retention
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19384124-19386351:-
Coord C1 exon
chr7:19384917-19386351
Coord A exon
chr7:19384186-19384916
Coord C2 exon
chr7:19384124-19384185
Length
731 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCATTTTTGTTTGTTCACAGGAT
3' ss Score
10.13
Exon sequences
Seq C1 exon
CTTTTCGTTGTTCTTGGAAAGTTGCGTGCACCCTGTTCCAAATTCCGTGAGACATTTTGGGAATCTGCCCATCTTAAGCCCTGTCTCCCTGCAGTTGGCACAGATAAAGACTCAGTTGGCACTGCACCAGCTGAATGCAATTGTTGGCACAAGTGTCACTCCGGCTGCAGTTCCTACAGCTGCTTTGACCTTGCTCAACTTGCTTAAGGTCACTATGTCGCATCCATTATACAATCCTCGTGGAGGACCTTTCCCCAGCGGTCAAAGACCCATCGTGCCCAGCCAATATGGTCTTGTGTCACAGCCTCGAATGGAGATGGGTGCAGCCCGTCTTGGCCCAGGTACCATGTCTGGTTCTCGTGCAGGATTGTTGGGCAGCTCGCCCTTCTCAATGGGACAAGGTCAGTCGCAGATTTCAACAGAAATCGAAGCTGCCATTGACCGTAACCTTCGGGGAGCCCGTGAGGAAGTGCGCATTATTTCGCAAATGCTCCAGCAACCCAAAAAAGCAGATCCTCGTCTGAGAAACGATTCCATGGATGAAGTGCTTTCCTCCAGGGGCAGCGGGTTTTCAGGGTCTTCGAGATCAGATGAGGTGGACTGGTCCATGTACCAAGCCCCAAGCAAGCTCTTTTCATCAAGCATGGAGCGCCCTTCCAGTTCCTCACCGGTGTTCAAGTCTGCAGGTTTTGGTGGAGGACCAAGTGGTTTGAGCAGCCAACGTCCGCCGGAACAGCGACCAAATCGCTACACTTCGGAAAGTGCCACCAGCATCCTAGCAAGCTTTGGACTTTCTAATGAAGACCTAGAACTTCTAAGCCACTACCCAGATGATCAGCTGACTCCTGACAACCTACCGTTTATTTTACGGGACATTCGTATGCGTAAGGTGAAGAGGGATGTTGATGAGAGACCAGACTACAATAAAGTCATTGACTATGGACATTCTAGAAAATTTGACTATCCTGAGGAGAGCTCAGAAAGTTACGCGACTGAACACCTTCCTAAAGAGACTCCAAAGTATGCTAGTAAGGTCTCCAGACCAGCCTTCACTGCTAGTAACATCACAAAGCAACCTCAGATGTGCCAATCAGGTCCAGGCCCCATACATGTTTCAGAGCTTCATAAACCTTCACCAGTTGATCCGAGACCCACTAAGACGATCCCAGCGAGACCACCTGCTTCCCAGCCTGCTCTGACACCTTCCAGTCGACCTCCTCTCCAGGTACCATCTCAGCTTGGTGTTCTTCCTATGATGTCTGTTGATGACATGCCTGGAGGTCCCAACTGGATCCCGTTCCTGTCGCCACCAGTCAGCATGCCCCCAATGAAGAGGCTACCGACTCCAACCATGATGAATGATTACTCTGCAGCTACTCCAAGAATCTTTCCTCATACATGCTCTCTATGTAACATTGAATGTGTCCAGATTAAG
Seq A exon
GTGAGTATCTTCTTAACCAGTAGAGCCTCATTTGAAAGATGTTTGCAATTTTTTTGTATGTAAAGGGACAGACTCTGTTTAATTTTTATTTTGCTGAAAACTTCAAGCTAATACTGTATTAAATTTAACTATGAAATAAAATGTCCGACATGTTTGTTTACTAACTTCAGTTGCCTTAATTATACAATTGCCTTAATTGCCTAATTATAGTTGCCTGATTGTGGGTTAAAATATTTTACAGTTAGCTGATGTAAATAGAGTAAATAGTACATGTAGTAAACCATGGTTGGACAAAAAATTATTGCACGTTGACTATTTCAAGCCAACTCCAGTTTCAGAAGATTTTTTTAGTCCAGTTCCTGGAAACCCTGAGGAAAGCCTATTGTAAATCCATTTTTTCCTGAAAACTAATTTAAGTCTTTGGACTGGCTGAAAAAAATCTGAACCTGTTGTGAGGACAGACCTGATGACTTTCCACAGTGCTGAAGAAAAAGGCAGATGATGATCTCCATTTCCATAATACCCGAGGCCACACTTTGGACTTGCTTTATATGTCAGAAGAGGTTTTGTCAAGAAAATCATGGACATTTTGTTCTTCACTATTTGGACCACTGTGGATTTCTGTTATTCTTATTATTTTTGTGCATCTGTTTTATAATCAGCTACACTGTTTAAAACACTTTTGATAAAGTCAATTCATTGATAATTGAAGCATTTTTGTTTGTTCACAG
Seq C2 exon
GATTGGCTCGAACATCAGAACACAAATGTTCACATTGAGAACTGTAGGCGTCTTAGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169:ENSDART00000160936:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAGTTGATCCGAGACCC
R:
ACGCCTACAGTTCTCAATGTGA
Band lengths:
354-1085
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]