GgaINT0004192 @ galGal3
Intron Retention
Gene
ENSGALG00000000160 | Q9PVW5_CHICK
Description
NA
Coordinates
chrUn_random:48423158-48428013:-
Coord C1 exon
chrUn_random:48427339-48428013
Coord A exon
chrUn_random:48423220-48427338
Coord C2 exon
chrUn_random:48423158-48423219
Length
4119 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCCTGTGTTCTCTCCCCCAGGAC
3' ss Score
13.32
Exon sequences
Seq C1 exon
GAAGCACGGCCCTACAACCCCGAAGCGCCGAGCGCAGAGAAGAGGGAGGAGTTCCAACGAGAGCAGAGCGTGCCCATGGGCGTCCCGCCGGCCGGCGTGGCGTGCGGCCCGGCCTTCCCACCTCAGGACGTCATGAAGCCCCCGCCGGCTTTCCAGAGCGACCCGGCCAACCCTCCCCCATTTTTCCCAGCAGAGCCAGCGGGGAAGGCGGGCGGGCTGTGCGCGGCGCCCGTGGGGAAGGCCGGCCCCCCGCCCGCGGTGCTGCCCGTCATGCCGCCCATCCTGCCGCTGGCTGTGCCGCCCATGGTGCAGCCCGTCGTGCCGCCGCTCATCTCGCAGCCCGTGGTGCCCATCCTCCCCCAGCCGCCCTTCTCGGCAGAGCTGCTGGCCATCCTGGAGCAGCGGGACAGGATCCAGCACGAGGCCGGGAGCAGCCAGCCCAGCGCCCCCAGCTCCGGGATGGGGCAGAAGCCCTTCCAGCCGCAGCCCGAAGGGCCCGTTAAGTCCCCCTTTGGCGTTGTGAAGGCGTCGTGGCTCCCGTCGTTCCTGCAGTCGGACTCCCAGAAGATCAAACGGTTGCCCACCCCGTCAATGATGAACGACTACTATGCCACGTCGCCGAGAATATTCCCACATATGTGTTCTCTGTGTAACGTAGAATGCGCTCGTATGAAG
Seq A exon
GTGAGTGTCTTTAAAGATTATTGCCATAGTTGTACCCAGCTCCTAACCCGCTGCTCTGTGTGGTGAGCCGATGTCTTACTGTGCCTCCGGTGAGCTGTGCTGCTGCTCGCCGGCGCGGGTGCTTTTGTGCAGGTGTCAGACTGCCGCAGGCGCTGTCGGTGCGGGATCGGCACCGTGCTGCACAGCGTGCTCTGTCCGAACCCCGCGCGCGTTGGTTGGGTTGTTGTAACGTTACGAACGGTGCGTGACTTTGGATTGCAAGCGGCAGAACAACCCCTTCGTCGCCAGCTTTAACCGCCGATGTCGCCCGGTGGTCAGCAGTGCTGTGCTGGCCCCAGCAGGCGTTGTGCTCTCAGCCCTGCTGCCGCAGAGCCGATTCCAACGGAGCACTGCTCATCTGTAGGAACGTCGCCTTCCAGGCGTGCCCTGCGTGGCGTTGGCTGTCCCAGGGGTGGCTCCCAGCTCTGAGCAACGCACACAGCACTGCCATCCATCCATCCATCCATCCATCCTACCCAGCCGGGGCTGCGGAGCTATGAGCGGCGTCGGCCGTTGGTGGAAGAGGAAGGAAGAAGAGAGAGAAGAGAATCCTGAAAGCCGTAGATGTTCCTTGAAGGAGCTGAGCTCCATGTGTCAAAACCCACAAGAACGTGACTTGCAATAACAGCGTGGTTTGTTACTGGTTCCGTGCATTGAAGTTTGAAGTAGCTTTCAACGCACGCGGGAAGTCGGGGGGGAGCAGAGCCATGCAAGGTTGCTGCATCTCAGACGGTGAGCGGCTGCTGCAGTGCTGGCAGCTGCGCCAGGGACGTCGCAGTGCTGAAGCTCTCCTGGTCAGGAAGAAATGCAGCAGGACGGCGGGTTGGGAAACTGGAGGGGGGGCTCCATTTCGGAGAAGAACGTCTAAAATGGAACAGGTAACAGATGAGGGCTTGTGTTGAGCACTGGGAGCTGCGCCCTGTTCCCGTGTGAGCCATTCTGTACGGAGCTCTGCGGAATGCGGCCGCTGCCAAAGGAGCTGGCTTTGCCTCGGAGACGTGGGGCTGTGCCTTCGTGTCCCACTGTGGGTTCCCACGTTGACATCACCGCCTTTCCTCCCTCCTTGTGCTGCCCTGAGCTGAGCTCTGTGGTTGAGCTGTGATGTGTGGCTTCGGGATGCTGTGCTACGAACTGCTGCCTTTGTGATGGGGCAAACTGGGAAGGTGTGGAATCACCAGGGTTGGAAGAGTCCTCCAAGAGCAGCCGGTCCAACCTCCCACCTGCCTCCGGTATTCCCCCACCGACTGAGTCCTGCGCTGCAACGTCTGGACAGCTGTGGTGTGCTTGGGAAGAAGAGGTGGCTCAAAGCACCGCGGGTGCTGAGTTACGGAGAGGATGGAGGATACCGAATGAGAAGAACCTTATCCAGCGCTCAAAGAGACTGCGTATCTGAACAGCAGAGTTACAGCGTTGCTATGATGACAGATGTGGGGTTCAGAGCGCTCGTGGTGCTGAGCATTTATTGTGCTGTAACTCTTAGGCAGTGCAGTCCCACACAGCGGCGGTGCCCATGGAGCACAGCCCATGTCAGAGCAGTGACCCCAGCGCTCCATCTCTGCATCGCTGGGCTGTGTCCCTTTGGCCCCCCCTATCCCATGGAGCCCAGCCTGACGAACCCTGAAGCATCTGCCCAGCTCTCCCTGCGTGCCATTTTTCTTGGATAGTTAACGTTTCTTGTTAACGAGCTTGGGTGCAGCCAAAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGAGCCCAGCTGAAAGTCTCTGTCTCGATGGGCTCCAAAGAGATCCAGCCCCCGCAAATCCTGACTCACAAGATTGAAGTGGATAGCCACTTAGGCTACGGGCGACATGCGGCACTGTTTTCTTGTACCATTAACGTTTCTTGTTAACGAGCTTGGGTGCAGCCAAAGCTGAAACAGCTCCGAGAGATGTCAGCGTACCAAAACAGAGAGCTCTGTCTGGAGTGCCACACACCTGAACGTGTCTGTGTGCTTCTGGCACCGGAGCAGACCTTGCGTGCCTCTCCGTGGAGCTGCCTGCACCTGAGGGCAGCGCTCCGTGTGAGCTCTGCTCTGGGAAGACGCCCATGAGAAGCACTGCAGTGCTGCTGCGAGGCACACCCGCTGTCCTCGTGTACACAGTGGGTCAGCAGAGGCACGTTTTTGTGTCCTGTGGTGTTCCTGCGATGAAGAATCATCCTGCCCTTCGTTAGGTGGGGTCTCACCTTGGTGTTCTCTGCAGGACCCCTGACAGCCTCCCCAGCAGGGCGAAGCACGTTGTGAAGGCTTCTCTTTCACCCCAGTAGTGACTGTAGTGGAGTACTGAAGCGTGATTTCTGCCTTCAGCCACCTCATTTCCAAACCACGTGGATGGTAACACCCAGCAGCAGCTCTGCAGCCCCCAGCCCAGCCCCACGCCTCGCGGTGCTCTTTGCTTTAACAGATGGATGCTGAGGCTCCAGGGCTGGCTGATCCACAGAGGTCCCCGCAGCCCTCACCGTCCTGCAGCGCTGGGACTGCCCCCGTGGTCGCTGCTGGGGAGGGCCAGAAGTCGGCTGGAGAGGAGGAATGCACCCAGATGGAGGCTCCTGTAACGGTGTGAGGTGTGAGGGTGCATTGCTGCCGTGAAGGCTGGGAGAGAAGGACGTTGGCTCGTTGGGGAGGAGCTTGAGAAGGGGATTGCTCTCCAGCAGCACACTGCTGGCATGCACAGAGCTCATAGCGCTGCACTGCTGCTCCTGGTGCTGCGTGTGTGCTGTGCGTGCAGCGCTGCCTGTGAGCTTACAGGCTGCTCCATCAGCCTGCTCCCCAGCCCGTCCCTCACCGTGCCATATGGACTCGCTGAGTTTCCGCTTCAGGAGCTGGAAATAGCTTCAAACAAAACCCTTTTTCTTTACAAGCACCCAACCAATGGTGTGCTGGGCACGAGGTGTTCTCCCACTGGCACGCTTTGAGGAAGCCATCATCAGCTGTGGTTCGAAGCACCGTGTCGGCCTTTCAGCCCATGAACGACTTANNNNNNNNNNCACCGTGTCGGCCTTTCAGCCCATGAACGACTTAGTGCCAGCTGAGTGCTTCGTGGGGTCTTAGAATGGTTTTATTGTCCTCTGTTAGCAGCCAGCGTGCAACCGGACGGGCTGCATGCGATGTCAGGGCAGCCCTGTTTTGTTACGTGGCCGCCCCACTCCCTGAAGCACCGCAGTGGGTGCTGCCCTGCAGGGCTCAGTGCTCGTCCCACTGCCGACCCTTCGGCAGCAGGTTTAGTTACTGTGATCAGCTCAGTGCTATTGAGAACGGTCTTTGTGCGGAGCTGCCCGTGCTGTTGTGCTTTCCTTGCACCACGTGGAGGAGTTCCCAGCTCTGAGGGCTGGCGTTGTGGGTCTGGGTTCGTGTTGTGCTTCCCCCTCAAGCGGGGCTTTGGTCGCAGCTCTCCCGCAGAGCAATTGATGGGGGTGGTGAGGTCTGTGGGACTTGTTCATGACCTCTGGGTGCAAGGTGTGGCTGGCAGCGATGGTGCTGGGCAGGGTAAGCCGTGCTGCTGCTGGAGCACTCGGGGCCCTCCTGGTGGTGCATCGTGTTGGGAGCTCAGCGCAGCACAGCGCGTGGGCTCGTGCAGCCCAGCAGCCACGGAGGCGCTTATGCTCTGTGTTGTGCAGCAGCCTTCCCCAGTCACTGCGTGCTCTCATCTCTTGCACCAAGAACGGTGATGCCAGGTGAGCGATGCGGCCTCGCTGACTTGCTGGTAGGACTGGCTGGTGGCACTGGGAGGGGAAGCACGACGGCACTTCAGCTTGTGGCCCAGCTGTGTGCTCACCCACCCCCTGTGCCTGTGTTCTCTCCCCCAG
Seq C2 exon
GACTGGATCCTGCACCAGAACACCCCCTCCCACATCGAGAGCTGCCGCCACTTACGACAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000160:ENSGALT00000000216:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.762
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]