DreALTA0003875-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000004078 | acsl4a
Description
acyl-CoA synthetase long-chain family member 4a [Source:ZFIN;Acc:ZDB-GENE-040426-1565]
Coordinates
chr14:28132989-28137346:+
Coord C1 exon
chr14:28132989-28133053
Coord A exon
chr14:28136863-28137098
Coord C2 exon
chr14:28137099-28137346
Length
236 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
GTTATTGTCATTCTCATCAGGTT
3' ss Score
7.85
Exon sequences
Seq C1 exon
ATTGCGCTTGGCAAGCAGAGACACGAATGCCCGATCCGGCTGAGGAGGAAAGAGACTAAAAGCCG
Seq A exon
GTTGCACATTTTGGAGTCGCATATTAGACACTTCTAGAATCTTTTTGAACTTTGACCCAAGGCAACAATCTTAGTGTATCTCAGGCTCTGCCTGACCCTTCATCCTTCAGTCCCCTCCAGCTTCTCAGCAGACGTGCGTCTGAACATGGACCTCAGTGCCGTTCTCTTGTTTCCAGTACATGCAGTAGTGTGGCTCTACTCCCTCTTGAGCTTTCTGCCATGGTACTTTCTGACAG
Seq C2 exon
GAGCCCAGGAAAAGAAAGCCTTGGCAAAGAGGCTCAAATCCAAGTCAACCAGCGATCAACCGGATGGACCATATCGCTCCACGGATCGCTTCGAGTCCCTGGTCACAGTGGACTTCCCCGGAAAAGACACCCTTGATAAGCTGTTTGACTATGCAGTAGAGCGTTTTGGTAAATTAGACTGCCTTGGAACCCGAGAAGTTCTGAGTGAAGACAATGAGACTCAGCCAAATGGAAAAGTCTTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004078-1-2,1-1,1-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.071
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.2=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCAAGCAGAGACACGAA
R:
TCCATTTGGCTGAGTCTCATTGT
Band lengths:
292-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]