GgaALTA1003328-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008088 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chr4:13740515-13742769:+
Coord C1 exon
chr4:13740515-13740561
Coord A exon
chr4:13742747-13742749
Coord C2 exon
chr4:13742750-13742769
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
GCTCTGGTCTTCACCCACAGGAG
3' ss Score
9.23
Exon sequences
Seq C1 exon
ATTTAACTGACATCGAATAAAACTTGGACATCGCTGTCAGATACCTT
Seq A exon
GAG
Seq C2 exon
TCCACTGCTGGCTCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088-0-4,0-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]