RnoALTA0002052-6/6 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019180 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:RGD Symbol;Acc:69401]
Coordinates
chrX:113625716-113634909:-
Coord C1 exon
chrX:113634866-113634909
Coord A exon
chrX:113625862-113626246
Coord C2 exon
chrX:113625716-113625861
Length
385 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TTCATTGTCTTTATCTACAGGTG
3' ss Score
11.65
Exon sequences
Seq C1 exon
ATCCCAGGAGATTGACCTGTTCTTAAAAGTGAAAGAAGAAATCT
Seq A exon
GTGTACTTTATTGTCGGCTTCCAAAGATTACTAACTTTTATCTGTATCACTAAAATTAAATTACCTTGGCTATACTGCTACTCTTACTGCTGCTTCCGTTACTGCCTTCTCCAGAAACCTAAGGCTTTAAGAAGCCAAAGAATAACAGCATATAAGCACCATAGTAGAAGCCTTGCCACTATGAAACTTAAGCTAAATGTGCTCACCATTGTATTGCTGCCTGTCCACTTGTTAATAACAATATACAGTGCCCTTATATTTATTCCATGGTATTTTCTTACCAATGCCAAGAAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCCGGAAGTCCATATCGCTCTGTCACGCACTTCGACTCACTAG
Seq C2 exon
CTGTCATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTAGCCAAGTTTGGGAAGAAGGACAGCCTGGGGACCCGGGAGATCCTGAGCGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019180-7-8,7-7,7-6,7-5,7-4,7-3-6/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.224
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGATTGACCTGTTCTTAAAAGT
R:
TTAAAAACCTTTCCATTTGGCTGCA
Band lengths:
182-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]