RnoALTA0002052-3/6 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019180 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:RGD Symbol;Acc:69401]
Coordinates
chrX:113625716-113634909:-
Coord C1 exon
chrX:113634866-113634909
Coord A exon
chrX:113625862-113625955
Coord C2 exon
chrX:113625716-113625861
Length
94 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
ATTTTCTTACCAATGCCAAGAAG
3' ss Score
-1.28
Exon sequences
Seq C1 exon
ATCCCAGGAGATTGACCTGTTCTTAAAAGTGAAAGAAGAAATCT
Seq A exon
AAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCCGGAAGTCCATATCGCTCTGTCACGCACTTCGACTCACTAG
Seq C2 exon
CTGTCATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTAGCCAAGTTTGGGAAGAAGGACAGCCTGGGGACCCGGGAGATCCTGAGCGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019180-7-8,7-7,7-6,7-5,7-4,7-3-3/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.224
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATTGACCTGTTCTTAAAAGTGA
R:
AAACCTTTCCATTTGGCTGCA
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]