HsaALTA0000173-2/4 @ hg19
Alternative 3'ss
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:3571]
Coordinates
chrX:108926554-108939425:-
Coord C1 exon
chrX:108939373-108939425
Coord A exon
chrX:108926602-108926604
Coord C2 exon
chrX:108926554-108926601
Length
3 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
ATTTTCTTACCAATGCCAAGAAG
3' ss Score
-1.28
Exon sequences
Seq C1 exon
ATTGAAATCACAGAAGATATTCGTGTTCTTCTTAAGAGAAAAAGAGGACATTT
Seq A exon
AAG
Seq C2 exon
AAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366-2-10,2-9,2-7,2-6-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.131
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGAAGATATTCGTGTTCTTCT
R:
TGTCTGAAGTGGGCTTAGCTT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)