HsaEX0002076 @ hg19
Exon Skipping
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:3571]
Coordinates
chrX:108926365-108976531:-
Coord C1 exon
chrX:108976368-108976531
Coord A exon
chrX:108939373-108939425
Coord C2 exon
chrX:108926365-108926895
Length
53 bp
Sequences
Splice sites
3' ss Seq
AATGCTGTCTCTTACTGCAGATT
3' ss Score
9.92
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
CTCCGCCGGCTGTCCGGGTGCGCGCGCGCCGCTGCGGCTTTTTCTCTGGCCTCCGCCGCGCGCTCCTCCTCGTCCCAGCGCTAGCGGGCACGCGGTTCCTTTTTGCGAGCTTTCCGAGTGCCAGGCGCCGGCCGGCTGCGAAGACGCGGTGGGCCGCCCCTCCG
Seq A exon
ATTGAAATCACAGAAGATATTCGTGTTCTTCTTAAGAGAAAAAGAGGACATTT
Seq C2 exon
GCGTACTTTATTGTCGGCTTCCAAAGATTACTAACTTTTATCTGTATCACTAAGATTGAACTGCCTTGGCTGTACTGCTATTCTTACTGCTGCTTCTATTATTGCCTTCTTCAGCACAATAAGGCTTTCAAAAGCCAAAGAATAACAAGAAATAAGCACCATTTTAGAAGCCTTTCCACTATGAAACTTAAGCTAAATGTGCTCACCATTATTTTGCTGCCTGTCCACTTGTTAATAACAATATACAGTGCCCTTATATTTATTCCATGGTATTTTCTTACCAATGCCAAGAAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCTGGAAGTCCATATCGCTCTGTCACACACTTCGACTCACTAGCTGTAATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTATCCAAGTTTGGGAAGAAGGACAGCCTTGGGACCAGGGAAATCCTAAGTGAAGAAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366-'0-6,'0-2,2-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.120
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(16.0=19.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTTTGCGAGCTTTCCGA
R:
TAGCAGTACAGCCAAGGCAGT
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)