MmuEX6046219 @ mm10
Exon Skipping
Gene
ENSMUSG00000031278 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:MGI Symbol;Acc:MGI:1354713]
Coordinates
chrX:142351379-142390344:-
Coord C1 exon
chrX:142390305-142390344
Coord A exon
chrX:142360387-142360436
Coord C2 exon
chrX:142351379-142351908
Length
50 bp
Sequences
Splice sites
3' ss Seq
AATGTTGTCTCTCACTGCAGACT
3' ss Score
9.61
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
ACCCAGTGGCAGACTCGTAGCGAGCGAGGCAGCACCTTCG
Seq A exon
ACTCAGATCACAGGAGATACACCTGTTCTTAAAAGTGAAAGAAGAAATCT
Seq C2 exon
GTGTACTTTATTGCTGGCTTCCAAAGATTACTAACTTTTATCTGTATCACTAAAATTGAATTCCCTTGGCTATACTGCTACTCTTACTGCTGCTTCCATTATTGCCTTCTCCAAAAACCTAAGGCTTTAAGAAGCCAAAGAATAACAGCAAATAAACGCCATATTAGAAGCCTTCCACTATGAACCTTAAGCTAAATGTGCTCACCATTATATTGCTGCCTGTCCACTTGTTAATAACAATATACAGTGCCCTTATATTTATTCCATGGTATTTTCTTACCAATGCCAAGAAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCTGGAAGTCCATATCGCTCTGTCACACACTTCGACTCACTAGCTGTCATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTAGCCAAATTTGGGAAGAAGGACAGCCTTGGAACCCGGGAGATCCTGAGTGAAGAAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031278-'0-5,'0-3,5-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.103
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=12.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGTGGCAGACTCGTAG
R:
AGGCAATAATGGAAGCAGCAGT
Band lengths:
147-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types