RnoEX0006180 @ rn6
Exon Skipping
Gene
ENSRNOG00000019180 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:RGD Symbol;Acc:69401]
Coordinates
chrX:113625716-113659944:-
Coord C1 exon
chrX:113659750-113659944
Coord A exon
chrX:113634866-113634909
Coord C2 exon
chrX:113625716-113625955
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATAAATGTTTCTCACTGCAGATC
3' ss Score
9.51
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GCCACGCCTCTTCTGGCTGTCCGGGCTGCGCGCGCGTCGCTGCGGCTCTCTTTTTTTCCACTGGTCGCCGAGGCTCGCCCCTCCTTGCAAGGCTGCTCCAGAGCTAGCGGGCACGCGAGCTCCTCTCCGGGAGCTTCCTTCCCCGAAAGGCCGGGACCCAGTGGCGGACTCGTGGTGAGCGAGGCAGCACCTTCG
Seq A exon
ATCCCAGGAGATTGACCTGTTCTTAAAAGTGAAAGAAGAAATCT
Seq C2 exon
AAGAAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCCGGAAGTCCATATCGCTCTGTCACGCACTTCGACTCACTAGCTGTCATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTAGCCAAGTTTGGGAAGAAGGACAGCCTGGGGACCCGGGAGATCCTGAGCGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019180_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.224
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTTCCTTCCCCGAAAG
R:
GCGTGACAGAGCGATATGGAC
Band lengths:
145-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]