MmuALTA0001063-2/4 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000031278 | Acsl4
Description
acyl-CoA synthetase long-chain family member 4 [Source:MGI Symbol;Acc:MGI:1354713]
Coordinates
chrX:138785922-138794979:-
Coord C1 exon
chrX:138794930-138794979
Coord A exon
chrX:138786159-138786161
Coord C2 exon
chrX:138785922-138786158
Length
3 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
ATTTTCTTACCAATGCCAAGAAG
3' ss Score
-1.28
Exon sequences
Seq C1 exon
ACTCAGATCACAGGAGATACACCTGTTCTTAAAAGTGAAAGAAGAAATCT
Seq A exon
AAG
Seq C2 exon
AAAAACGCTATGGCAAAGAGAATAAAAGCTAAGCCCACTTCAGACAAACCTGGAAGTCCATATCGCTCTGTCACACACTTCGACTCACTAGCTGTCATAGACATCCCTGGAGCAGATACTCTGGATAAATTATTTGACCATGCTGTAGCCAAATTTGGGAAGAAGGACAGCCTTGGAACCCGGGAGATCCTGAGTGAAGAAAATGAAATGCAGCCAAATGGAAAGGTTTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031278-1-5,1-4,1-3,1-2-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.135
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(3.1=19.7)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGATCACAGGAGATACACCT
R:
CCAGGTTTGTCTGAAGTGGGC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: