DreALTA0005253-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000094709 | arl8
Description
ADP-ribosylation factor-like 8 [Source:ZFIN;Acc:ZDB-GENE-030131-5762]
Coordinates
chr7:41440191-41441998:-
Coord C1 exon
chr7:41441938-41441998
Coord A exon
chr7:41440297-41440338
Coord C2 exon
chr7:41440191-41440296
Length
42 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
GAAGCTGTTTTGTTGTGCAGTTT
3' ss Score
4.69
Exon sequences
Seq C1 exon
AACACAAGGTGATTATTGTGGGATTGGACAACGCTGGGAAAACAACTATACTTTATCAGTT
Seq A exon
TTTAATGAATGAGGTGGTGCACACATCTCCTACGATTGGCAG
Seq C2 exon
CAATGTGGAAGAAATAGTGGTGAAGAAAACCCACTTCCTGATGTGGGATATTGGTGGTCAAGAGAGTCTCCGCTCTTCCTGGAACACATACTACTCCAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094709-3-3,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(33.3=100)
A:
NA
C2:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.0=54.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGGATTGGACAACGCTG
R:
ATGTGTTCCAGGAAGAGCGGA
Band lengths:
135-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]