RnoALTA0004508-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000018714 | Arl5b
Description
ADP-ribosylation factor like GTPase 5B [Source:RGD Symbol;Acc:1305569]
Coordinates
chr17:82079045-82080727:+
Coord C1 exon
chr17:82079045-82079105
Coord A exon
chr17:82080580-82080617
Coord C2 exon
chr17:82080618-82080727
Length
38 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
TCAATGGTGTCTTTCAACAGCTT
3' ss Score
7.84
Exon sequences
Seq C1 exon
AGCACAAAGTAATCATTGTGGGACTGGACAACGCGGGGAAAACCACCATTCTTTATCAATT
Seq A exon
CTTAATGAATGAAGTAGTTCATACTTCTCCAACCATAG
Seq C2 exon
GAAGCAATGTTGAAGAAATAGTTGTGAAGAACACTCATTTTCTTATGTGGGACATCGGTGGTCAGGAGTCTCTGAGGTCATCCTGGAACACCTATTACTCAAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018714-2-3,2-2,2-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(32.8=100)
A:
NA
C2:
PF0002516=Arf=FE(27.8=100),PF128032=G-7-MTase=PD(45.9=56.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGTGGGACTGGACAACG
R:
AGAGACTCCTGACCACCGATG
Band lengths:
122-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]