MmuALTA0002023-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000017418 | Arl5b
Description
ADP-ribosylation factor-like 5B [Source:MGI Symbol;Acc:MGI:1923119]
Coordinates
chr2:14989766-14991594:+
Coord C1 exon
chr2:14989766-14989826
Coord A exon
chr2:14991447-14991484
Coord C2 exon
chr2:14991485-14991594
Length
38 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
TCAATGATGTCTTTCAACAGCTT
3' ss Score
7.66
Exon sequences
Seq C1 exon
AGCACAAAGTAATCATTGTGGGACTGGATAACGCGGGGAAAACCACCATTCTGTATCAGTT
Seq A exon
CTTAATGAATGAAGTAGTTCATACTTCTCCAACCATAG
Seq C2 exon
GAAGCAATGTTGAAGAAATCGTTGTGAAGAACACTCATTTCCTTATGTGGGATATCGGTGGTCAAGAATCTCTGAGGTCATCCTGGAACACCTATTACTCAAACACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017418-3-7,3-6,3-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002516=Arf=FE(11.4=100),PF128032=G-7-MTase=FE(32.8=100),PF0231712=Octopine_DH=PU(5.9=33.3)
A:
NA
C2:
PF0002516=Arf=PD(7.7=60.0)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGAAAACCACCATTCTGT
R:
AGGTGTTCCAGGATGACCTCA
Band lengths:
121-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: