DreALTA0006221-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18235245-18235644:-
Coord C1 exon
chr21:18235454-18235644
Coord A exon
NA
Coord C2 exon
chr21:18235245-18235349
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTTTTGGTTTTCCTAGAAGAAA
3' ss Score
2.62
Exon sequences
Seq C1 exon
GTCAGCAAGATGGAGCCGTCTCCACTGGCTCACCCACATCAGTTTTTCCAGGTGCCACATCGCCGAGTTCACAAACAGCAGTAGTATCTCCAGCTCCAGTGCCCGCTATCACTCCTAGCATACCAGCTGTACAGAACACAACTGCTGCCGCTGTGATACCCAGCATGCCTCCATCACAACCCACGGTTAAA
Seq A exon
NA
Seq C2 exon
AAAGGGGTAAAGAGGAAAGCAGACACAACCACCCCTACTACCTCTGCTATCACCGCGAGCAGAAGCCAATCACCCACCCCAATTTTAGAAGGCAAGCAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527-10-8,10-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=NA C2=0.547
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043920=Bromodomain=PU(52.8=38.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAACACAACTGCTGCCG
R:
GGTGGTTGTGTCTGCTTTCCT
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]