DreALTA0006221-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000006527 | brd3a
Description
bromodomain containing 3a [Source:ZFIN;Acc:ZDB-GENE-030131-6141]
Coordinates
chr21:18235245-18235644:-
Coord C1 exon
chr21:18235454-18235644
Coord A exon
chr21:18235350-18235352
Coord C2 exon
chr21:18235245-18235349
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TGGTTTTTTGGTTTTCCTAGAAG
3' ss Score
6.6
Exon sequences
Seq C1 exon
GTCAGCAAGATGGAGCCGTCTCCACTGGCTCACCCACATCAGTTTTTCCAGGTGCCACATCGCCGAGTTCACAAACAGCAGTAGTATCTCCAGCTCCAGTGCCCGCTATCACTCCTAGCATACCAGCTGTACAGAACACAACTGCTGCCGCTGTGATACCCAGCATGCCTCCATCACAACCCACGGTTAAA
Seq A exon
AAG
Seq C2 exon
AAAGGGGTAAAGAGGAAAGCAGACACAACCACCCCTACTACCTCTGCTATCACCGCGAGCAGAAGCCAATCACCCACCCCAATTTTAGAAGGCAAGCAGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006527-10-8,10-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=NA C2=0.547
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043920=Bromodomain=PU(52.8=38.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAACACAACTGCTGCCG
R:
GGTGGTTGTGTCTGCTTTCCT
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]