HsaALTA1045084-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000169925 | BRD3
Description
bromodomain containing 3 [Source:HGNC Symbol;Acc:HGNC:1104]
Coordinates
chr9:134048083-134050588:-
Coord C1 exon
chr9:134050374-134050588
Coord A exon
chr9:134048449-134048454
Coord C2 exon
chr9:134048083-134048448
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGGTTATTTCACTGTCGCAGAAA
3' ss Score
7.31
Exon sequences
Seq C1 exon
GTACACAGCAAGTGGCGGCCGTGTCCTCTGTCTCCCCAGCGACCCCCTTTCAGAGCGTGCCCCCCACCGTCTCCCAGACGCCCGTCATCGCTGCCACCCCTGTACCAACCATCACTGCAAACGTCACGTCGGTCCCAGTCCCCCCAGCTGCCGCCCCACCTCCTCCTGCCACACCCATCGTCCCCGTGGTCCCTCCTACGCCGCCTGTCGTCAAG
Seq A exon
AAAAAG
Seq C2 exon
GGCGTGAAGCGGAAAGCAGACACAACCACTCCCACGACGTCGGCCATCACTGCCAGCCGGAGTGAGTCGCCCCCGCCGTTGTCAGACCCCAAGCAGGCCAAAGTGGTGGCCCGGCGGGAGAGTGGTGGCCGCCCCATCAAGCCTCCCAAGAAGGACCTGGAGGACGGCGAGGTGCCCCAGCACGCAGGCAAGAAGGGCAAGCTGTCGGAGCACCTACGCTACTGCGACAGCATCCTCAGGGAGATGCTATCCAAGAAGCACGCGGCCTACGCCTGGCCCTTCTACAAGCCAGTGGATGCCGAGGCCCTGGAGCTGCACGACTACCACGACATCATCAAGCACCCGATGGACCTCAGCACCGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169925-13-20,13-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=NA C2=0.638
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCTGCCACACCCATC
R:
TCGTGGGAGTGGTTGTGTCT
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains