RnoALTA0006084-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007681 | Brd3
Description
bromodomain containing 3 [Source:RGD Symbol;Acc:1308925]
Coordinates
chr3:6009473-6011520:-
Coord C1 exon
chr3:6011306-6011520
Coord A exon
chr3:6009575-6009580
Coord C2 exon
chr3:6009473-6009574
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGGTACTTTGTTGTCACAGAAA
3' ss Score
6.32
Exon sequences
Seq C1 exon
GTGCACAACAAATGGGAGCTGTGTCCTCGGTCTCCCCAGCACCCCCCTTCCAGAACATACCCCCCACCGTATCCCAGACACCCGTCATTGCCGCCACCCCTGTACCAACCATCACTGCAAACGTCACGTCAGTTCCAGTCCCCCCACCCGCCGCACCGCCTCCTCCTGCGACACCCATCGTCCCAGTGGTCCCTCCCACACCGCCTGTAGTCAAG
Seq A exon
AAAAAG
Seq C2 exon
GGCGTGAAGCGGAAAGCAGACACAACCACACCCACAACGTCCGCCATCACTGCCAGCCGGAGTGAGTCTCCCCCGCCACTTTCAGAGCCCAAGCAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007681-23-11,23-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=NA C2=0.653
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCTGCGACACCCATC
R:
GTTGTGGGTGTGGTTGTGTCT
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]