DreALTA0006224-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000100129 | brd3b
Description
bromodomain containing 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5316]
Coordinates
chr5:63757820-63763247:-
Coord C1 exon
chr5:63763069-63763247
Coord A exon
chr5:63758189-63758191
Coord C2 exon
chr5:63757820-63758188
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
ACCTATGTCATTGTCCTCAGAAG
3' ss Score
8.35
Exon sequences
Seq C1 exon
AAAACCAGCAATCGATAGCCTTGACTCCTGGATCTCCATCGTCGTCATGTCCGAGCTCTCCTCCTCAGCTGGCTCAGACTCCTGTAATCGCTGCCACTCCAGTCGCCACCATCACAACCAATGTCCAAGCTGCGCCCCCTGCCACGGCCATGATCCCAACCGCACAGCCTGTGGTCAAA
Seq A exon
AAG
Seq C2 exon
AAAGGGGTGAAGCGGAAAGCAGACACGACCACACCGACAACCTGCGCGATCACTGCCAGCCGAAGTGAGTCGCCTACTGCAATGTTGGAGTCCAAACACAGTAAAGTCATTTCCAGACGAGAGAGCACAGGTCGACCCATTAAACCTCCCAAGAAGGACCTGGAGGACGGGGACGTCCAGCAGCCAGGCAACAAGAAAAGCAAGCTCAACGATCATCTCAAATACTGTGACACTATCCTCAAAGAGATGCTTTCCAAGAAGCACGCGGCCTACGCCTGGCCCTTCTACAAACCTGTAGACGCGGAGGCCCTGGAGCTGCACGACTATCATGAAATCATCAAGCAACCGATGGACCTCAGCACTGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100129-11-6,11-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=NA C2=0.605
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043920=Bromodomain=PU(52.8=37.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACCAATGTCCAAGCTGC
R:
GTGTGGTCGTGTCTGCTTTCC
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]