DreALTA0007980-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38445982-38448583:+
Coord C1 exon
chr9:38445982-38446137
Coord A exon
NA
Coord C2 exon
chr9:38448476-38448583
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
3' ss Seq
TTCTCCCTATCGCACGCTAGCCC
3' ss Score
4.88
Exon sequences
Seq C1 exon
CCGGCAGCCGATCCAGTTCACCAGGGAAGCTTTTGGGACATGCGTATGGCAGAATTCCTAGAGCCACTGCGCCAACAACTCCCTCAGACAAGTACTCCAGAATCCCACGAAGCCAGGGATGCAGCCGTGAGACCAGCCCCAATAGACTGGGCATAG
Seq A exon
NA
Seq C2 exon
CCCGGAGCAGTCGCATCCCTCGCCCCAGCATGAGTCAAGGGTGCAGCCGTGACACCAGTCGCGAGAGCAGCCGCGACACCAGCCCCGCTCGGGGCTTCACTCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280-29-37,29-36-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACAACTCCCTCAGACAA
R:
CTGCACCCTTGACTCATGCTG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]