DreINT0047180 @ danRer10
Intron Retention
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38445982-38448583:+
Coord C1 exon
chr9:38445982-38446146
Coord A exon
chr9:38446147-38448475
Coord C2 exon
chr9:38448476-38448583
Length
2329 bp
Sequences
Splice sites
5' ss Seq
GCAACACAT
5' ss Score
-18.37
3' ss Seq
TTCTCCCTATCGCACGCTAGCCC
3' ss Score
4.88
Exon sequences
Seq C1 exon
CCGGCAGCCGATCCAGTTCACCAGGGAAGCTTTTGGGACATGCGTATGGCAGAATTCCTAGAGCCACTGCGCCAACAACTCCCTCAGACAAGTACTCCAGAATCCCACGAAGCCAGGGATGCAGCCGTGAGACCAGCCCCAATAGACTGGGCATAGGTAGGGGCA
Seq A exon
ACACATATTCACATCTAACACTTTAACACAAAGGATGCCTATAAATAGCAGACACATCAAACAACTTGATCACAAAACGCAAACGGACCTAAAACAGTCCCTTAAGAAATCTCTATGGAATATGCAGTAAAACCTGCAGATTGTTTGCTGCTTTATGCCTTGATTGTGGTAAGCATGGTGTTTTTTTAAGCTTTCTTTGAACAAAAAGAAGACATTAACTAGCTGGATCGTTGTATAGTGCAAATCCCATTAGATTTGACTAGTTTAGAAAGACAGGGGGCTTTTTTGCTGGGTTACTGAGGAGCGACGTTTGTTTAAAAGGTGAATGCGGGTGTTTTGATTGCCAAAACTGAATTAGTGGCTATTCATTGCCACATTTTGTATGTGATTGATTTACTTTTTGTTGTTTAATGATAACAGGACCGACTGATGACCATTGATCATTCCTCAATTCTCCTCAGCTTTTATGACCTTTTCTGAGAAATGTTTGTGTACATTTTGCCATTTTAAAGAACTGACCAATGAATGTCCAGACAAATATAATAAGATCATGCCATTTAACAACAAGTTATTTATCTGTAAACAAGAAGCACAGGTCCATTCGGATATTTAAGATATTTACATTTTTGAATGCCTTACAAGTTTTATTAATGCTTTAAGCTAAACATGGATGCAACTTTTGAATTGAGTTTCACATTGCCGACAAGCTTAACTTAAAGGCAAAAAAACTGTGATGCAGTACATCAACTACCAAATAAAATAAATACATCACATCACCTGTAGCAGAGTGAACATAGATGGAGGGATGCAAAAATGCGCTGATAGGGATATCATTTTTCGAAAGCGTTGTGTCAGAAAGTGTCAGTGTTGATTCATGAGAGCTCGATTTATGCACTGATGATCATCCGTCTTGTTTATGATGTCATGCATTATAGACGGCTGCAATTTGTATGCAAACTCCAAATGTAAAGAAGCACTTACTTATTGTCAAAATAATATATTAACATTCAGAAGTTTGGGCAAGCTTTTCTAAAATGTTTTTGAAGTCTCATCAAAGCTGCATGTACTTGATTTATTGTAATGTTTTGAAATATTACAATTTGAAAAATATATATACAGTATTTTATAATGTAATTTTCTGAGCTTTTCATGAGCTGTTACTCCAGTTTTCTGTTTCAGATTACCCCAAATCATTCATATATGCAAGTTTGCTACTAAAAGTACTATTATACGTTTTCCATGCTTGTTTGCAATGGTTGTGTAAACCAAGGGTATAGAATTAGCATAGACGGAGGGGACACATCTCCACCAATATCCACAGATTATTAAATCGTCCCCACCAATAATTTAATTAATGCTAAATAATGCTTTGTCAAAATTTTCCAGTCAGGCTTACTGTGCAAGCTCAGATGAGACATGGACATAAGTTGCTACATTTCAAAGTGTCAGTGACTTGAAGTCAAGTTCGATACAAGTTAAGTTCGCCACTATTACTACCATAATAGTAACCATGTAAGTGCAATTAATAAACAATAATTTTCGAAAACAACAATCAAGATAAAATGGATATTGTGTAAGTTGCCTCCACCTTTCCAAAACTTTGCATTCCTAAAATCATATAAATTTACTTTTGCACCACAAGACATGCTTGATTTAATGTTGTTTTATTACTAATTGTATTTAATTTATTTATTTATTAAATTTTAATTTCAAACTGCACAATAGAACTTGTGCTGTTCTGTTTGCACGCTCGGAGAAGGAAAAGAACATGGACATGTAAAGTCATCTTTTAGTTTGAAGTGCATAAATGGCAATATTATACTTGCAAAATTGTGTTCAGATGCGGGTGGTAAGTAATTATGCACAAAGAAGCCCTCACTAAACTCAATACTTCATTAATCTACCTTTTTGTCAGACATTCCTGTAACTTTACATTTTAAACATGAAGTTACATTTACATTTTACAATTGGGGGTTGGTGTGAAAATAAGTGCCCACCATTATCAAAAGTAAATCTACGCCCTTGGGGTAAACTATCAATTCACAAAATTTCTTGGTGCACCTTTGATGCTGCATGTTTGTTAAAAGCTGAAATGTTGTTTAAAGCTAATTCCAGATGTTCCGCTTAAGCCTTGTGCTTTAAATGTTTAACCTTTCTAAAGCAGAATGTCCCCGGAATGACCGTCCAAACCTCACCTTTCCCCTAAACCCACTTTTCCTCTCTCTCTCTCTCTGACTCCCTGGCCTCACTAATGCCCTAACCTATGTTCTAACAGCCAGGCTGTGTGGTAAAGCTCTTCTTCCTGCCACTTCTCCCTATCGCACGCTAG
Seq C2 exon
CCCGGAGCAGTCGCATCCCTCGCCCCAGCATGAGTCAAGGGTGCAGCCGTGACACCAGTCGCGAGAGCAGCCGCGACACCAGCCCCGCTCGGGGCTTCACTCCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280:ENSDART00000137955:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]