DreEX0021926 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38445982-38451852:+
Coord C1 exon
chr9:38445982-38446137
Coord A exon
chr9:38448422-38448583
Coord C2 exon
chr9:38451749-38451852
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCTAACCTATGTTCTAACAGCCA
3' ss Score
7.16
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCGGCAGCCGATCCAGTTCACCAGGGAAGCTTTTGGGACATGCGTATGGCAGAATTCCTAGAGCCACTGCGCCAACAACTCCCTCAGACAAGTACTCCAGAATCCCACGAAGCCAGGGATGCAGCCGTGAGACCAGCCCCAATAGACTGGGCATAG
Seq A exon
CCAGGCTGTGTGGTAAAGCTCTTCTTCCTGCCACTTCTCCCTATCGCACGCTAGCCCGGAGCAGTCGCATCCCTCGCCCCAGCATGAGTCAAGGGTGCAGCCGTGACACCAGTCGCGAGAGCAGCCGCGACACCAGCCCCGCTCGGGGCTTCACTCCTCTGG
Seq C2 exon
ATCGCTTTGGTCTGATCCATCAGGCTCGCATTTCTGCATCTGTCAATGCTATGAGGGTGCTGAACACTGGCACAGAAGTGGAGGCGGCCGTGGCTGATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280_MULTIEX2-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGTTCACCAGGGAAGCT
R:
AAAGCATCAGCCACGGCC
Band lengths:
249-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]