RnoEX0021475 @ rn6
Exon Skipping
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34501923-34515432:+
Coord C1 exon
chr13:34501923-34502090
Coord A exon
chr13:34508012-34508119
Coord C2 exon
chr13:34515329-34515432
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCCTCATGCTGCACGCTAGCAC
3' ss Score
2.89
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CTGGCAGCCGGTCAAGTTCCCCCGGGAAGCTTTTGGGAAGTGGTTATGGTGGACTCGCTGGGGGCTCCTCAAGAGGCCCACCTGTAACACCATCTTCAGAGAAGAGAAGCAAGATCCCCAGGAGTCAGGGATGCAGCCGAGAAACAAGCCCTAACCGGATTGGATTAG
Seq A exon
CACGGAGCAGCCGTATCCCCCGACCCAGCATGAGTCAGGGGTGCAGCCGCGATACCAGCCGTGAGAGCAGCCGAGATACAAGCCCTGCTCGGGGCTTCACACCACTCG
Seq C2 exon
ATCGGTTTGGGCTGGGCCAGTCAGGACGGATCCCTGGTTCTGTGAGCGCCATGCGAGTCTTGAGTACCAGCACAGACCTGGAAGCCGCTGTGGCCGACGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376_MULTIEX3-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGCCGGTCAAGTTC
R:
TCCAGGTCTGTGCTGGTACTC
Band lengths:
250-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]