RnoEX0021476 @ rn6
Exon Skipping
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34501923-34515432:+
Coord C1 exon
chr13:34501923-34502090
Coord A exon
chr13:34512160-34512222
Coord C2 exon
chr13:34515329-34515432
Length
63 bp
Sequences
Splice sites
3' ss Seq
GCCGTTCCTTTTACCTGCAGCCT
3' ss Score
10
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
CTGGCAGCCGGTCAAGTTCCCCCGGGAAGCTTTTGGGAAGTGGTTATGGTGGACTCGCTGGGGGCTCCTCAAGAGGCCCACCTGTAACACCATCTTCAGAGAAGAGAAGCAAGATCCCCAGGAGTCAGGGATGCAGCCGAGAAACAAGCCCTAACCGGATTGGATTAG
Seq A exon
CCTCTCGACGTCATTCCAGGTCCACTAGTGCTCTCTCCACTGCTGAATCTGTTGGGCAGTCAG
Seq C2 exon
ATCGGTTTGGGCTGGGCCAGTCAGGACGGATCCCTGGTTCTGTGAGCGCCATGCGAGTCTTGAGTACCAGCACAGACCTGGAAGCCGCTGTGGCCGACGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376_MULTIEX3-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAGATCCCCAGGAGTCA
R:
GTGCTGGTACTCAAGACTCGC
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]