GgaEX0017562 @ galGal3
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27706085-27715109:-
Coord C1 exon
chr7:27714139-27715109
Coord A exon
chr7:27710115-27710177
Coord C2 exon
chr7:27706085-27706188
Length
63 bp
Sequences
Splice sites
3' ss Seq
GCCATTCCTTCTACTTGCAGCTT
3' ss Score
9.78
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
TTCTTCCTTGTTCCAGAAGGGTGTTTATCTTTTAATTAAGGAAAAAATCTTTCACGAGAGTTTTTTGTAGCTTCATCTGTTTTGCATGCTTTGTAATTGTAGAGCTTCCCTAAATGATTAAAGATGTCCTACTCCACTCGAATGACAAACCTTGGATTGCTTAAGAAACAAGGATACTATCAGCCAGACATTTAATACTGATGAAATTTCACATCACAAACACAGCTCAGCATGTAGCATAGTTGGTTTGTAAGAGCCTGAGCTGGCTGCTGGAACTGATGATTACTAATGTAATAATTACCGTAACTAACAGAAATGTGACTTGACTTTGAGCTTTTCTGTCCTCATTAAACTTGTTCACCTTCTCTGAAACTCTCCATGCTGCATGCTAGCACGGAGCAGTCGTATCCCCCGACCCAGCATGAGTCAGGGGTGCAGCCGTGATACCAGCCGTGAGAGCAGTCGAGATACAAGCCCTGCTCGGGGCTTTCCTCCACTTG
Seq A exon
CTTCTCGACGTCATTCCAGGTCCACTAGTGCTCTCTCCACTGCTGATTCTGTTGGGCAGTCAG
Seq C2 exon
ACCGGTTTGGACTCGGACAGTCAGGCAGGATGCCTGCTTCTGTGAATGCCATGCGAGTCCTGAGCACAAGCACAGATCTGGAGGCCGCTGTGGCTGATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-'25-36,'25-35,26-36
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGAGAGCAGTCGAGATA
R:
CCTCCAGATCTGTGCTTGTGC
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]