Special

MmuEX0011511 @ mm10

Exon Skipping

Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:118525297-118539369:+
Coord C1 exon
chr1:118525297-118525455
Coord A exon
chr1:118536135-118536197
Coord C2 exon
chr1:118539266-118539369
Length
63 bp
Sequences
Splice sites
3' ss Seq
GCCGTTCCTTTTACCTGCAGCCT
3' ss Score
10
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
CTGGCAGCCGGTCAAGTTCCCCTGGGAAGCTTTTGGGAAGTGGACTTGCTGGGGGTTCCTCCAGAGGCCCACCGGTAACACCATCCTCAGAAAAACGGAGCAAGATCCCCAGGAGTCAGGGATGTAGCCGAGAAACAAGTCCTAACCGGATTGGATTAG
Seq A exon
CCTCTCGACGTCATTCCAGGTCCACTAGTGCTCTCTCCACTGCTGAATCTGTTGGGCAGTCAG
Seq C2 exon
ATCGGTTTGGGCTGGGCCAGTCAGGACGAATCCCTGGTTCTGTGAACGCCATGAGAGTCTTGAGTACCAGCACTGACCTGGAAGCAGCAGTGGCTGACGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (disopred):
  C1=1.000 A=1.000 C2=0.984
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000144818





     
                   









    
Main Skipping Isoform:
ENSMUSP00000128089





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000067858, ENSMUSP00000140593
          









    
Other Skipping Isoforms:
ENSMUSP00000042266, ENSMUSP00000137137, ENSMUSP00000139526, ENSMUSP00000139619, ENSMUSP00000140019, ENSMUSP00000140095, ENSMUSP00000140167, ENSMUSP00000140665, ENSMUSP00000140860, ENSMUSP00000141105, ENSMUSP00000142203
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr2:121414141-121414203 
ALTERNATIVE
HsaEX0015471
(CLASP1)
Human
(hg19)
chr2:122171717-122171779 
ALTERNATIVE
HsaEX0015471
(CLASP1)
Rat
(rn6)
chr13:34512160-34512222 
ALTERNATIVE
RnoEX0021476
(Clasp1)
Cow
(bosTau6)
chr2:73559177-73559239 
Chicken
(galGal4)
chr7:25635958-25636020 
ALTERNATIVE
GgaEX0017562
(CLASP1)
Chicken
(galGal3)
chr7:27710115-27710177 
ALTERNATIVE
GgaEX0017562
(CLASP1)
Zebrafish
(danRer10)
chr9:38450756-38450818 
ALTERNATIVE
DreEX0021927
(clasp1a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCCCAGGAGTCAGGGATGTAG

				
R: 
TCCAGGTCAGTGCTGGTACTC

				
Band lengths: 
135-198

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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