MmuINT0036713 @ mm10
Intron Retention
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:118525297-118532085:+
Coord C1 exon
chr1:118525297-118525455
Coord A exon
chr1:118525456-118531977
Coord C2 exon
chr1:118531978-118532085
Length
6522 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
CCCTTCATGCTGCACGCTAGCAC
3' ss Score
3.43
Exon sequences
Seq C1 exon
CTGGCAGCCGGTCAAGTTCCCCTGGGAAGCTTTTGGGAAGTGGACTTGCTGGGGGTTCCTCCAGAGGCCCACCGGTAACACCATCCTCAGAAAAACGGAGCAAGATCCCCAGGAGTCAGGGATGTAGCCGAGAAACAAGTCCTAACCGGATTGGATTAG
Seq A exon
GTAAGGATCTCCCAGACTTGAAACTCCACTCCCAGCATGGCTGTCATCTCGGTTATGATGCAATCACTGTCTGACACGGAAAGCAGGGCTCTGCTCTTGAGCTCAGGAAGTTACTTCAGCTGTGCTTAAAACTAGGCTCTTTGTGCGCTTATACAGATTACACTGAGATTTCATCAGAGTCAAAAACTGTGGAACTTAATGCTTCCAACGACTGCGGTGGGACTTTATCACTAGCAAAGCACTAGCATTGGAAAACTAAGAATTCCTTTTCTTATTAGACCCCTTCACTCTTCATTTTCCTTCTATTGAATTCATTCTAGTCATTAACATATATTAACTTTCAAAAGTATTTCAGGGTCCCTCTTTTTATTTTGATCTCTTACACTCAAATAATTTGACATAATTTTGTTAAAACTTGAAAACTAGAGATTGCTGGACACCAATCTAAATCCGCACTTTACTGTTGTGTTGGCTTTCTTTATAATAGGGGTAGATACAAGTGATTCTCAGTACCTTACAGACACTCCAGCGCGTATGTCCCCTCTCAATGTAAAAGTCTTTCCGACTATAACACCACAAACCACTATTTATCCGTGTATGTACTTGCATTATATATCTGTCAGCTTCCTTAAGTACACACACTTATTACTTTAGAATAAGAGGACTATATCTTTAACTTTTCTTGTTGGCTTAGTTTTTTACTCATTGATTTTTCTCAGCCTTTTTTTACTAGACTGTTCACTGTGTACCAGGTCCTTTTTTAGACCCAAGAATTAGAAGATTTTTTAATCTTAGCTTCTCAAGTCCAAAGCCTTCTAGTCTATTGGGAAAGGGTGGGGATGTGAAACTGCACGGTATACCATGGCAGGAGCTCAGCACATCAGAAAGGAGGCTCGTTTCCCCATGTCTGCTTGATCCTCCTAGATCTCCTCATAACACAGCTGTCCCAGAATACGTCCTGCTTTGAGGTCAAGGAAGAGATGCTCTGTCAAAGAGAAAAGTAGTGCCAGAAGCAGCTGGGCAAGGACTCGTGAGCCATGTGGGATGAATGGAGACCGAGGGCAGCCGGACTGGGTGGGCTCCGACCGGGGCAGAAGGCAAGGAGTGGGAACATTTAATTTGAACTCCGTTTCCAGGAGGAAATGTCTGAATTGCCGAATCTGATAACACAACCCATCTTCTGCTTTTGCCTCCAGTTTTGTTAGGAAGACATTTTAAGTCTAGGTGTGACTCCTCCACTGTCTTTTCCACTGTTGACTTCTGCAGTTTATGTGCGTTCTCTGATTGCAATGTATTCTACTGTTATATCTAAACACGGTCTGTCCTGCTTAGGGCACTTAGAGGTTTACCAAAGGTGCTACTTATATCAGTTCCTCTTCTTGTCGCTGTGATAAAACACCTCACTATGGCAGCTTAGGGGAGGAGAGGCTTGTTTTGAATCTCGGTGTAGGGTACAGTCCCTCATGTCAGGGAGGCATGAGACAGGAGTGTGAGGCAACTGCTCACACTATACATGCTGTCAAAAATGGAAGAGATGGACACTGGCATTCAGTTCACTCTTTTGTTTATTTAGTCCAAGACCCCATTCTACAGCATGGGTCTTCCTACTCGAGTTTACCCTGTCAGGAAACTCCCTTACAGACATGTCTCTTTGGTGACATGTCCTGTCCAGCTGACAATCTGCTAACTACCAGACAACCTTTCATGTTCTTCTTGAAATTAGGAAATGATACAATTTCAGTAATCTAGTACTACTAACTCCAGGGCCTGCTCTTCCGTGGTCTTTATCTGACAGTCTATTGTGTATAGTAGAAAAAGGAGCATTTTCTAAGCTTTGAAAGCCAGTGTCTTGAAACATCAGTAAAGGAATTTGTTTCCTTTCAAAGAGCTCTTACTTGAAGTTGATATTTTTTGTCTTTTCTATTTTTTGGAGACGGAGTCTTATGTAGCCCAGGCTAGCCTAGAACTCAAGAGCTCTGCCTGCTCTCATCCCCTAGGTGCTGGGGTATACTACCATGTCTGTTTCCAGTATTGTTTTGAAGGAACTTATTCCCTTGGTGCTTATGGATGCAATGAGTAATGTTAGAGTTTTAAGACCATACATAAAGTTCTGACTGAAGATGTTTTATTTCTGCTCATTATAAGGACACACATATATGGGGTTGGGGATTTAGCTCAGTAGTAGAGCGCTTACCTAGCAAGCTCAAGGCCCTAGGTTCGGTCCTCAGCTCTGGAAAAAAAAAAAAAAAAGAACACACATATATGAACAAAATGTACTTTTATACTTATCCATTTATAAGGCTGTAGGTGTTTAGCATGGCATTGAGTTTATACCAGAGTTTATATATATTTGTGTATCTAATCATTTGCTTTACTCTTTAGCATTATAAGTACAAATATTCAAAAGAGGGTAGCATGTTTTAAGAATGTTTCCTATAACCCCCAAACCACTTAACTCAGCAGTTTTTGTTGTTGTTGTTGTTTGTTTGTTTGTTTTTGGGTTTTCTGAGACAGGGTTTCTCTGTGTAGTTCTAGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCTCCACCACTACCTGGCCACTCAGCAGTTTTAATGGCAGCTACACTAGACTTAGAATTTACATCAGAAGCTAATCCTAAGGCTAGGGATATGGTTCCATGGTAAAGCTGCTAGCCACACAAGCCTGATGGCACAAGATCACCAGAACCCACATAAAAAGCAAGATGTAGGAGCACATACTTGTAATCCCAGCACTCCCATTGCAAGGTGGGAGGCAGAGCAAGACTTGCCTGCAAGCTTACAGGCCAGCTGGCAGGCCAGAAACAAGAGAGAGCCTGTCCAGCAAGGTGGAAACTAAGGACTGACTCCTGACAATTGTCCTCTGACCTCTACACGTGTTCTGTCTTCCACCCTCTCTCACACACACACACACACACACACACACACCCCAAAACCAATTCTAGTGACAATCTACAAATTATTCCTTTTTTGTCTTAAATACATTTAGCTGCATTTTCATTTCTTGTTATAGAAATGCCAGGGCTCTTATTTGACATCTAAGATGTTTTACATTTTGTTTTGTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGATGTGGTCCCATTCTGTTGGCTTAGAACTCACTGTAGCTCATGGAGGCCTAGTTATAGTCTTTTTCCAGCCTTCTGGGAGCTGGGATTACAGGCGCCACACTGAGCTGCCATTTAAAACTTAGTAAAAAGCATGTAACTGGATAATCAAGAAACAAAGCTCTTTTTGCTCCCGGGAGCTCACATACATCCCCATGGTGCTCTTCTTCCACCACCCCCACCCAACCCCTTTTCCTTCCTTCCCTTTTTCCCCCTTATTCCTTCATAAGCTAAACAATTCCTAATTCCCAAACAATTAGGGACGCACATGTATAAATTGTTCCACTTTGGTGTCTCTTAAAGACTTTACAGATATGAAAACACACAAGCAGCATCATTCGTGATTGTTAGCCATTGCCTCTGGTGTGCTTCTCCTGGGCATGGAATGAAGAGACTGGAAAACCATTTAACATTTTGCAACCTATATTGCATGTTGTGTATTTTAAATGTCTTATGATTTTCTGGTTTAAAATATTTTTTGGAAGATTAAAGTTAATTAAATGATTACTTTTAACTGTGAAACTAGGTTACTGGGACATGAAAGTGTCTAGAGAGACACTTATTCCTTTAACAGTAGTTTTCATTATTCCTCTCTCCTTTCTGCCTTTGCTGTGTGTTCTGATTGGGCCCTTTCTTAAAAGGGAGAAGTAAGGTTGGAGAGATGACTCAGCAGCTAAGAGTATGAAGGCTTGCTGCGGACTGGAGCTCAGTTACAGGGACCCACAGCAGAGAGCTCACAACCACTCCTAACTCCAGCCCAGTTGGATCTGATGCCCTCTTCTGGCTCATGCAGGCATTGCACTCACATAGAATACACTCCTGCAGACATGTACAAACACACATAAAATGAAAGTTAATTCTTTTTTAAGGCAAAAGTAAGGATCACCCTTAAACACTATGATACAGGGTGGAGTCTTATCAGGAAGTACAAAACAAGTGGTTTTTCAAAACTTTGCCAGCATTTCAGACAGGCTTTCTAGCTTGACTGCGTGTAAGGAAGATGAAGTATATTTCATTGCCTGTTTCCCTTACACTTCCCATGCCGTAGTCTCACCTGGGATGTTTGCTGTGAGCTCATACTAACAAGACAAGTTGATTTTACACTCCAGATAGACAGATTGTGGATGGGTAGGTGGGTGGGTGGATTAATGGAGATTATATGAATGAGTTTTGACCACTTAATCTATAAAACTAATTTTTCTGTGCTTACTTTAGCTCTTTCTGTAGATTAGCCTTGGAACTAATGTTGTAAGTGGGTGTTTTTTCTCTTGTGGCTTAAATGACCGAACATTTGAAATATCACTCTTACCACAAAATGCCCTTTAATGGAGTTTGGGGAATTTATGGAAAGATTTCTGACAAAACAGCAGACAGACTTTCTTTTTCTATGTATCACATCATAAAGGAGCCCATGAATATGGGAGGTGAATGAATTCTCTGGAAGAAACACTAGTAGGATATGACTTGTCAAGAAGTTTGTGTGGGCATTGTTCCATATCACAGCTGTTTATTCTTGTTAGTGGTCTCTGTTGTCTTCATAAAGCAGACTTACTCCAGGAAGAGCATGTGCTTTCATTTCTGCAGCGTTTCTATGATATGCTCTGGATAAAGTTAGGGTGTAGTTCACTGAGCTTGCGTTTATATGAAAACTGCCTGGCTTGGACTACAGTGGAGAAGGTCAGGATTCCCGTGTGTGCTGATTGGCAAGCAACTCCGAAGTGCATGTGTGTGCACTGTCCCCAATATCCTTCTCATATAAAGGATGTGATTCTTCTTTATTCCTTAAGAGGCCCAGTGGCTAGCCCGGGGAGGCAGCTGGCGGCTGTACAGGTCTCTCTAAAGATAGGCAGCCCTGCTGTGTGCATCTGAGGACGCTCCTGTATGTTGGTCGGCACAGCTCGGCGCCTGTTGCTCTCGCTCTCTTTATAGGACCTGTGTAGAATATCACAGGAATTGCTGATTAAATAGTCACCGGTACTGTGAGTGGGAACCTCAATTTTTCTGTGTCATTTTGTTAGAATTAAGAAATTTCTAATGAGGCCCTTGAGGGAGCTTGTTCAGATTACATCCCTCATCACATTCCCCTGCCTGTAGACTGCCAAGCATCTGAGCATCTCTTACAAGCTCTTGGGGTCTGGCTTCACCCCAGCACGAGGTTATTGTGCACATGCTAAGCTGGCTTCATGTCTCACACATTCTTCCTTATTGGAGAGTTCCATGATTCTGGTTAATGAGCTGTTCTTGTTATAGTTAGCTGTAAATATTTGCTCTGAAACAATAGACAATGTTCATTGTGATAGAGAAGATGTGCTTGGTTTTACACCAGAGATACAAGCTCACTCATTTCCACAGTCTCAAGCCATTTCTACCTAGTGTAGTAGCACTTAACCTCTGAGGATGAGTTGTCTCTAGAAGCTATGATGTTAGGTATCCCTCTGCCCACATCAGCAAGCTGTGTTTCTAAAGAGTGTTGTTTTACTTGTAACTTATTTCTCTCTATTCAGATTGAGAACCACAGCTGTCATGGTCTTTCTGAGCTTCACAGCCAAAATAGTAGACCTTAGACTACTGTACATATGGTTTTTGTCTTACAGTCTTAATGTTTCAGTGTTTGGGAATAGTAAACTGTTCAGAGGCAATTGTAATTCCAAGGCCAGGAGAGGAATCTTCTTGCCAAATATTGAGATTGTCAGTTTCCTAGCTGTAGAGACCAGAAAATAATGAGCACCCGATTTTACTCTGCATCTGTTGGTTTAGATAGTTGGTTTTGTGTGTGTAATATCTCCATCTTGACTGTGGGCGGCTTTCCAGCTAGATTTGCATGTTGACTTCTCTGTAGCAGGCTACCCTGGGAAAAAGTGAGCCATCTTCTTTTTGTTACGAAGTTTGTAGACCTCAAGACCAGAGACTTTATTTCTACTATTCATCCAAACAATTGGTCTTTGGGGAGACCAGGTGCCATGAAAACAACCTTGGTGTCCTAAGCTCTTACTGAGATGTCTGCTAAAGCTTCAGACACTGGTTGTTTCTGGCATGCTTTGGATCTTATATTGGATGCCAGGCTGTCCTTTGGGAAGAGTTCATTTCTCACATTTAAGTGTATTCACTTCAGGGTTTAAAATCTACAGCCTTCTGAGGGACAGACCCTCCTGTCAGTGAGACCTCTTCATGGGCAGGTGGCCCCATACTTCCTATCAGAGACAATGCCATAATTTCATTTAAGCAAATGTGACTGATACTTGTGAGATTTTCTGTCTTCATTAAATTTGTTCACCTTCTCTGAAACCCTTCATGCTGCACGCTAG
Seq C2 exon
CACGGAGCAGCCGTATCCCCCGACCCAGCATGAGTCAGGGGTGCAGCCGCGATACCAGCCGTGAGAGCAGCCGCGATACAAGCCCTGCTCGGGGCTTCACACCACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302:ENSMUST00000190571:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types