GgaEX0017562 @ galGal4
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25631928-25645313:-
Coord C1 exon
chr7:25645146-25645313
Coord A exon
chr7:25635958-25636020
Coord C2 exon
chr7:25631928-25632031
Length
63 bp
Sequences
Splice sites
3' ss Seq
GCCATTCCTTCTACTTGCAGCTT
3' ss Score
9.78
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
CTGGTAGTCGGTCTAGTTCTCCGGGTAAGCTGTTAGGAAGCTCCTATGGTGGCTTGAGCAGTGGAACATCCAGAGTTCAACCTGTGCCATCATCTTCAGAGAAGCGCAGCAAGATCCCCCGGAGCCAGGGATGCAGTCGAGAGACGAGTCCCAACAGAATAGGACTAG
Seq A exon
CTTCTCGACGTCATTCCAGGTCCACTAGTGCTCTCTCCACTGCTGATTCTGTTGGGCAGTCAG
Seq C2 exon
ACCGGTTTGGACTCGGACAGTCAGGCAGGATGCCTGCTTCTGTGAATGCCATGCGAGTCCTGAGCACAAGCACAGATCTGGAGGCCGCTGTGGCTGATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645_MULTIEX3-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTTCAGAGAAGCGCAGCA
R:
GACTCGCATGGCATTCACAGA
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]