DreEX0021927 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38448476-38451852:+
Coord C1 exon
chr9:38448476-38448583
Coord A exon
chr9:38450756-38450818
Coord C2 exon
chr9:38451749-38451852
Length
63 bp
Sequences
Splice sites
3' ss Seq
CACTTCCTGTCCCCTTGCAGCCT
3' ss Score
10.89
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
CCCGGAGCAGTCGCATCCCTCGCCCCAGCATGAGTCAAGGGTGCAGCCGTGACACCAGTCGCGAGAGCAGCCGCGACACCAGCCCCGCTCGGGGCTTCACTCCTCTGG
Seq A exon
CCTCTCGACGTCACTCTCGCTCCACCAGCGCTCTGTCCACGGCCGAACCCGTGGGCCAGTCAG
Seq C2 exon
ATCGCTTTGGTCTGATCCATCAGGCTCGCATTTCTGCATCTGTCAATGCTATGAGGGTGCTGAACACTGGCACAGAAGTGGAGGCGGCCGTGGCTGATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280_MULTIEX2-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATGAGTCAAGGGTGCAG
R:
CAGCACCCTCATAGCATTGACA
Band lengths:
145-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]