GgaEX0017561 @ galGal3
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27706085-27719470:-
Coord C1 exon
chr7:27719303-27719470
Coord A exon
chr7:27714139-27714246
Coord C2 exon
chr7:27706085-27706188
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTCTCCATGCTGCATGCTAGCAC
3' ss Score
3.64
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
CTGGTAGTCGGTCTAGTTCTCCGGGTAAGCTGTTAGGAAGCTCCTATGGTGGCTTGAGCAGTGGAACATCCAGAGTTCAACCTGTGCCATCATCTTCAGAGAAGCGCAGCAAGATCCCCCGGAGCCAGGGATGCAGTCGAGAGACGAGTCCCAACAGAATAGGACTAG
Seq A exon
CACGGAGCAGTCGTATCCCCCGACCCAGCATGAGTCAGGGGTGCAGCCGTGATACCAGCCGTGAGAGCAGTCGAGATACAAGCCCTGCTCGGGGCTTTCCTCCACTTG
Seq C2 exon
ACCGGTTTGGACTCGGACAGTCAGGCAGGATGCCTGCTTCTGTGAATGCCATGCGAGTCCTGAGCACAAGCACAGATCTGGAGGCCGCTGTGGCTGATGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGTCTAGTTCTCCGGGTA
R:
CCTCCAGATCTGTGCTTGTGC
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]