BtaEX0009119 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73555937-73570350:-
Coord C1 exon
chr2:73570183-73570350
Coord A exon
chr2:73564168-73564275
Coord C2 exon
chr2:73555937-73556040
Length
108 bp
Sequences
Splice sites
3' ss Seq
CCCCTCATGCTGCACGCTAGCAC
3' ss Score
2.89
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CTGGCAGCCGATCCAGTTCCCCAGGGAAATTGTTGGGAAGTGGTTATAGTGGCCTTACTGGGGGTTCCTCAAGAGGCCCACCTGTGACACCCTCTTCAGAAAAACGAAGCAAGATTCCCAGGAGTCAGGGATGTAGTCGAGAAACAAGTCCAAACCGCATAGGATTAG
Seq A exon
CACGGAGCAGCCGTATCCCTCGACCCAGCACGAGTCAGGGGTGCAGCCGCGATGCCAGCCGTGAGAGCAGCCGGGATACGAGCCCTGCTCGGGGCTTCGCGCCGCTCG
Seq C2 exon
ACCGCTTTGGGCTCGGCCAGGCAGGAAGAATTCCTGGTTCTGTGAATGCCATGCGGGTTCTGAGCACCAGTACAGATCTGGAAGCTGCTGTTGCTGATGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781-'33-33,'33-31,35-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAATTGTTGGGAAGTGGT
R:
CAGCAACAGCAGCTTCCAGAT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development