DreALTA0009219-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000070775 | cyp2x9
Description
cytochrome P450, family 2, subfamily X, polypeptide 9 [Source:ZFIN;Acc:ZDB-GENE-061027-109]
Coordinates
chr25:17306668-17307177:-
Coord C1 exon
chr25:17306989-17307177
Coord A exon
chr25:17306802-17306830
Coord C2 exon
chr25:17306668-17306801
Length
29 bp
Sequences
Splice sites
5' ss Seq
AGGGTACCG
5' ss Score
4.62
3' ss Seq
CTTAATGCTAAACTTTTTAGCTC
3' ss Score
4.08
Exon sequences
Seq C1 exon
ACAGTTAACAGCCGGACAGCAGTCAGCATGCTGGGCTTTTTGATACTGGTGTGGATATGCATCGTCCTCCTCTTCCTCTTCATCCAGATCCCGAGGCCTAAGAACTTTCCTCCAGGACCTCGTCCTCTGCCATTATTTGGGAATTTGCTGGAGCTCAATATCAACAATCCTTTGAAAGACTTTGAGAGG
Seq A exon
CTCGCCAATCGCTATGGAAATATTTACAG
Seq C2 exon
TCTGTACTTCGGATCAAAACCATGGGTGGTTCTGAATGGTTTTGAGGCTTTGAAGGAAGCTCTGGTTACTAAGGCTGTGGACTTTGCAGGACGCCCGCAGGACCTCATGGTCAACCGTGTTACAAAAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070775-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=48.1)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCCTCCAGGACCTCGTC
R:
CCACCCATGGTTTTGATCCGA
Band lengths:
115-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]