MmuALTA1044452-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000096852 | Cyp2d12
Description
cytochrome P450, family 2, subfamily d, polypeptide 12 [Source:MGI Symbol;Acc:MGI:88604]
Coordinates
chr15:82555108-82556372:+
Coord C1 exon
chr15:82555108-82555335
Coord A exon
chr15:82556201-82556268
Coord C2 exon
chr15:82556269-82556372
Length
68 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCTTTGTCCCTCTACTTCAGCTT
3' ss Score
7.93
Exon sequences
Seq C1 exon
CATTGGTCTCTGGGAAGCCTGGGAAGCAGTGGGGCAGTCATGGAGCTGCTGACTGGGACTGACCTGTGGTCTGTGGCCATATTCACAGTCATCTTCATATTACTGGTGGACCTGATGCACCGGCGCCAGAGCTGGACTTCTTGCTACCCACCAGGCCCTGTGCCATGGCCTGTGCTGGGTAACCTGCTGCAGGTAGACCTAAATAATATGCCATACAGCTTGTACAAG
Seq A exon
CTTCAAAACCGCTATGGTGACGTGTTTAGCCTACAGATGGCCTGGAAGCCTATGGTTGTGATCAACAG
Seq C2 exon
AATGAAGGCAATGAAGGAAGTGCTGTTGACCTGTGGAGAGGACACTGCTGACCGCCCTCCAGTGCCCATCTTTGAGCATCTTGGTTTCAAGCCCAGATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096852-1-2,1-1,1-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.6=41.3)
A:
NA
C2:
PF0006717=p450=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTCTTGCTACCCACCA
R:
CTCAAAGATGGGCACTGGAGG
Band lengths:
172-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types