MmuINT0044956 @ mm10
Intron Retention
Gene
ENSMUSG00000096852 | Cyp2d12
Description
cytochrome P450, family 2, subfamily d, polypeptide 12 [Source:MGI Symbol;Acc:MGI:88604]
Coordinates
chr15:82555108-82556372:+
Coord C1 exon
chr15:82555108-82555335
Coord A exon
chr15:82555336-82556200
Coord C2 exon
chr15:82556201-82556372
Length
865 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCTTTGTCCCTCTACTTCAGCTT
3' ss Score
7.93
Exon sequences
Seq C1 exon
CATTGGTCTCTGGGAAGCCTGGGAAGCAGTGGGGCAGTCATGGAGCTGCTGACTGGGACTGACCTGTGGTCTGTGGCCATATTCACAGTCATCTTCATATTACTGGTGGACCTGATGCACCGGCGCCAGAGCTGGACTTCTTGCTACCCACCAGGCCCTGTGCCATGGCCTGTGCTGGGTAACCTGCTGCAGGTAGACCTAAATAATATGCCATACAGCTTGTACAAG
Seq A exon
GTGAGTGACTTAGCGATGGATGGTATATGAAGTTATGGTGTCCTTAGTGGCACATAGTAGGGTTTGAACTACAGGTCAGACTGGGATATAGACCCCCCAAGAGGGAACAGGCTTAGAAATGTTTTGGTAGCAGCCACTGGGAGTACCTAGAGCAAACGTTTATGGGGAAAAAGTCGAGGAGATGAAGCAGGATGTGACAGCAGGATTTAGTGTGTTTATACAGGGCAGCAGCCATAGAGATCCCAAGTCCATTATGGCCCTGTCAAAAACAAGGTCTTTGCCTGCTGTGAGGTCTACCACCACAGACAGTCAGGACACAGAGTGTAGAGAGGGACTGTGGCTGCCTGAATCTCTTGCTGCTGTGTGCTCTCTGGCCTCACTGCCCATCCTGAGAAACCAGTTTCTTAGTGAATGTTGACATGCTAAAGAACCCAGGACAGTTTCTGGCTCTGGCAAGGTCACCACTGGGGTGTCACATCTACTGTGATTACTTTGCTGAACTTAAAAATAAGACACCACAGTGGTAGGCAGCCTTATGCTGGGGATGGAGCTCAGGGAAGAGCATTTTCCCAGGATACATGAGGACCAAAGTTTAATAACAAGAACACATACAAATATACATGTACACACACAAATACAGAGAGAGAGACAGAGAGAGACAGCTAGATGCATGGACTCACATACACATATACACACATACTTAAATTCACACACACAAACATGTATGTGTAAACATACACAAATGTGCACTCACACACATAGAAAGTGCCTTGCACTCTCTCACACTGACATTGTTATTCAGTGAGCCTGGTTCTATGATCTGTGGGCACCTCTACTTCCTATGTGCTTTGTCCCTCTACTTCAG
Seq C2 exon
CTTCAAAACCGCTATGGTGACGTGTTTAGCCTACAGATGGCCTGGAAGCCTATGGTTGTGATCAACAGAATGAAGGCAATGAAGGAAGTGCTGTTGACCTGTGGAGAGGACACTGCTGACCGCCCTCCAGTGCCCATCTTTGAGCATCTTGGTTTCAAGCCCAGATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096852:ENSMUST00000068861:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.6=41.3)
A:
NA
C2:
PF0006717=p450=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGTCTCTGGGAAGCCTG
R:
CAGTGTCCTCTCCACAGGTCA
Band lengths:
343-1208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types