MmuINT0044956 @ mm9
Intron Retention
Gene
ENSMUSG00000057138 | Cyp2d12
Description
cytochrome P450, family 2, subfamily d, polypeptide 12 [Source:MGI Symbol;Acc:MGI:88604]
Coordinates
chr15:82385528-82386802:+
Coord C1 exon
chr15:82385528-82385765
Coord A exon
chr15:82385766-82386630
Coord C2 exon
chr15:82386631-82386802
Length
865 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GCTTTGTCCCTCTACTTCAGCTT
3' ss Score
7.93
Exon sequences
Seq C1 exon
TAGCGTTTTTCATTGGTCTCTGGGAAGCCTGGGAAGCAGTGGGGCAGTCATGGAGCTGCTGACTGGGACTGACCTGTGGTCTGTGGCCATATTCACAGTCATCTTCATATTACTGGTGGACCTGATGCACCGGCGCCAGAGCTGGACTTCTTGCTACCCACCAGGCCCTGTGCCATGGCCTGTGCTGGGTAACCTGCTGCAGGTAGACCTAAATAATATGCCATACAGCTTGTACAAG
Seq A exon
GTGAGTGACTTAGCGATGGATGGTATATGAAGTTATGGTGTCCTTAGTGGCACATAGTAGGGTTTGAACTACAGGTCAGACTGGGATATAGACCCCCCAAGAGGGAACAGGCTTAGAAATGTTTTGGTAGCAGCCACTGGGAGTACCTAGAGCAAACGTTTATGGGGAAAAAGTCGAGGAGATGAAGCAGGATGTGACAGCAGGATTTAGTGTGTTTATACAGGGCAGCAGCCATAGAGATCCCAAGTCCATTATGGCCCTGTCAAAAACAAGGTCTTTGCCTGCTGTGAGGTCTACCACCACAGACAGTCAGGACACAGAGTGTAGAGAGGGACTGTGGCTGCCTGAATCTCTTGCTGCTGTGTGCTCTCTGGCCTCACTGCCCATCCTGAGAAACCAGTTTCTTAGTGAATGTTGACATGCTAAAGAACCCAGGACAGTTTCTGGCTCTGGCAAGGTCACCACTGGGGTGTCACATCTACTGTGATTACTTTGCTGAACTTAAAAATAAGACACCACAGTGGTAGGCAGCCTTATGCTGGGGATGGAGCTCAGGGAAGAGCATTTTCCCAGGATACATGAGGACCAAAGTTTAATAACAAGAACACATACAAATATACATGTACACACACAAATACAGAGAGAGAGACAGAGAGAGACAGCTAGATGCATGGACTCACATACACATATACACACATACTTAAATTCACACACACAAACATGTATGTGTAAACATACACAAATGTGCACTCACACACATAGAAAGTGCCTTGCACTCTCTCACACTGACATTGTTATTCAGTGAGCCTGGTTCTATGATCTGTGGGCACCTCTACTTCCTATGTGCTTTGTCCCTCTACTTCAG
Seq C2 exon
CTTCAAAACCGCTATGGTGACGTGTTTAGCCTACAGATGGCCTGGAAGCCTATGGTTGTGATCAACAGAATGAAGGCAATGAAGGAAGTGCTGTTGACCTGTGGAGAGGACACTGCTGACCGCCCTCCAGTGCCCATCTTTGAGCATCTTGGTTTCAAGCCCAGATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057138-Cyp2d12:NM_201360:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(30.6=41.3)
A:
NA
C2:
PF0006717=p450=FE(67.1=100),PF0006717=p450=PU(1.8=10.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGGTCTCTGGGAAGCCT
R:
CAGTGTCCTCTCCACAGGTCA
Band lengths:
344-1209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: