GgaINT0039176 @ galGal4
Intron Retention
Gene
ENSGALG00000011413 | CYP2J2
Description
cytochrome P450, family 2, subfamily J, polypeptide 2 [Source:HGNC Symbol;Acc:HGNC:2634]
Coordinates
chr8:25617546-25625270:-
Coord C1 exon
chr8:25624454-25625270
Coord A exon
chr8:25617709-25624453
Coord C2 exon
chr8:25617546-25617708
Length
6745 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AGTGATGGGCTCTCTTTCAGCTT
3' ss Score
5.96
Exon sequences
Seq C1 exon
TTTTACCTTTATTTCTAAAGAAAGTGGATCTAGAAAATCTCTGGTTGGAGATACTCAGAAGTGACAGCAATTGCCTTCCTTTTACCATGTGGCCAGCCCTGGAGACTCAAACCAGCCATCAGGTGCTCAGTACATCCCAGCCCTGCCTATAGTGACACTTCGGGTTCCCATTCCCATTGAGGTGACCGCCCCCACCTCTTTCTTTCCACCACTGCATAGAGTGCTTTCAGTGGAAATTCCCCCATGGCCAGGTTTTCGTGCTTACCCTCCCTACTACACTGGGTTGGGAGACAGAAGACCTTTACCTGCTGTTGGCTGCAGGCAAGGGACACGATGGAAGAAGCAAGACTGAAGTGCCTGGCGGCAGCTTTGTGAGCTGGATTTTGGTTTGCCTGCTGGGCCGGGGTTGCAGCTGGCTGGCCTGATCTCCTTCCCTCCCACTGGCTCTCACTGAGAGCAGAATATGCCTTCTCCCGCTGATTTCTGCTTGCCATATTGACTGCAGCAGGGTATAATGGAGACAAGTCAGGCAGAAAGCCAGCCACCCTTGGGAATGATTAAAGGGCAAGCAGGAAAGGATAGAAGTGAAGAAAAACAGGCTGACACTTAGGACGTGGTGGATTTGGGGCAAATTATGCCCCTTTCACCACCTCACCCCATGCTCTGGACCGTGCAGCAGAACCTCTTTTCAGCTCTCCCCAAAAAGAGGCATTGCACCGACCCGGTGCACGCGGGGAACAAAATCCCCAGAACGCGTACAATATCCCCATTGTGCATGGATTTGCAGACTGATTATTCAGAGCGCAGCCAAGGAAAG
Seq A exon
GTAAGGCTATGACCCATTGTTTTCGTGCGATCAATTGAATACTGTCATTTGCATTTAAAACGCTCCGAATTCGCACTGTCAATATGCCAAACAGCTGCTCGGGCTTTTCAGCATTCCATGGTGACAATCACACTATCGTACATCATTGGCACCAGGATTTGCAATACTCTCAGTGTCAAAATTTTGTGGGTTTTTTTTTTTTTTTTAAATCCCCCCCCTCCCCCCCCTCCTCCCTTCTCTCCCCCAAATACCCAAACCTGTGAAAAATCCGCTTTTAAAACGATGGTGTTCGGTGCTGCTAAGCAGGCCTTCGCAGATGCCAACATATCAAAATTCATCTCTTTTCTTCCTCTCCTACAATTAAAAGGTAGTTAAGAAAGAGGCTGTTCCTGATAGATCCACCTTCTGTTTTCTCCTTTGTATGCGTATTATTCATTAGCAGTCTAATAAGAGTTTCAAAATGCTCTGTGCCTCTGCCAGCAGGGCATATGTATGTAGACATGTGCTTGTGACAGATAAGTACATAAACAGCATATTGGCACCAGAAAGACATCTGTGCCTAGAAAAACGCTTGTGATATGTACATAAATGACATTTTAGCTCTAGTCAAGTCCTTGTGGCTTTGAGAGGAATATGTGACTGTACTCTTCTCTGTGAATATTGAAAAGGTGCATCTTAGGAAGGAGAGAATTTCAGAGGTTTACCGAGAGCCAAAGGAAGAACTCTGGTGTGGGAGCCCAATGCTGAGCACAGTCCAGCACCCCCAAATCTGACTCGATGTGGCCATGTGGGCATATCACTGCATGGAGCTGGCAAAAGCAATGCAGCAAAGAGAACAAAATCTTGTCCTGAAGACCAAAAAGTGGAGGTGTTTGGGGTGTGGAGGCACAGGCAGGGGTCCCCATGTGCTTCCTGCTACCTGCGTGTAATTATCTGGCTGGGAAATGTGAAGAAAAGCCCTTCAGCACAACTGTCTTCTATGGCAGAAAAGGGAAGTGGTGGTCTGTTACAGAAGGGAACCAAGTGTGCCATCCTCTGGAAACCTGACTGGGTTGCACCAAGGGCCACTTTATAGGTACACTCATATTGCTCAGCTTAGGCTCAAAACACCTCAGTTTAATCATTCACAGTGACAGCCGCCTGTTTTACAGCTTTAATCCATTCTGGAAGCTGCACTACGGCCAGGAGGTAATACGTGAGAGGTATGTGGGAGAGCATTTGCACCTACTCCTAGGTAGGAATAAGGGGAGATGTAAAATTGGAGATGCTTGAGTATTTTCCATGCACACACAGCAGCAACAAGAGACCATCTTCCCTGATTTTGGGGCTTGGACTCCCTGAGATATTTGAGCCCTCAGCTCCCATGGGTGAACTTTCATACTGGTGAAGTCACCTCAAGAGTGGAACTTTGGCTTTTCCCCCTGTTAGCATTGGGTTCAAGCACATACTCCAGAGGTTGCTCCAGGAGGACTGCAGGACTCACAGCTCCTCACTTTCTGCAATTACAAATCTCCCGTAGATTTCACCAGATCCAATAACACAAATCCTAAAAGGAAATGAATGTCCAAAGCCGCCATCGCCTCTGGGTCCATTTGGACTCACCTGGGTTGGATCACGAAGAGGCAGCTGTGCATGCACAAAGCCCTCTGGGACGTGGCCCCATGCACACAGAGGGGTTGTTCATCAGCAAAAACGTTTTTCTGGGTCTGTTGTGAGAAAGAAAGAAGCAGCCAAATATTCCCTGGTTCCTTTGACTTCTCTGGGCCTGTTGTTTGGCATGGCCAGGTGGGCATCCCACACCTCCCGCGTCCCCTGGAGGTCCTGCAGGCTGCGGGGGGAACCACAGAGCTGTTACTCGACTGCAAAAAAGTGTTCAGGGGGAAAATTGTCTCCAGTCATTCTCATTTTGCATGTGATTTTTCCTACATATGTTTCTAATCATTAAGAAATTCTGTAGCTTAAATAATGCTCTGGAAGTACGGTAACTGTTGGACTACATTCTGTTGTAACCTTATTGAATTTCACTTCTCTGGAAAAAATAATGGGATACTATATCTTGAAAAACAAATGGTAATTGAGTTTTTAACAGAATGTTTCTCTTTGTGTTTCAAAACCTTCTGCACACAGTTAGACATCTAGCCAGGGAAGAAGGTACAAAGCATATGGGCCAATTTCTGTCTGTTGGCTGATCAAGATGCCTTAATATTTAAGCAGTGATGGGTGTGTGTCCATGCAATATGGCACAGTGTATCTCTCTGCCCGATACCCACGAGCTCAGGTGAGATGGCCAAAAATTTTATACTGTGGTTAGAAGAGCATTCTAGGAGGCAATGGGGAAGGTGAGCTTACAAACTGCTCCCTATTAGGTGTTGGCGTACCATCCTTATCCTGCATGAATTCACATTTTGGCTAATAGATAAGAAAAGGTCTATATTCCTGTGTTTGTGGTGCTGCCCAGGGACACAGGTTTACTTTCTAGGTGACAAGGTTTTGCAGAGACTGCAGAAATAAAAATTGTCCAACACTTTTTCTTTTCCCATATGCTGTAGTGCTGTGACTTCCTGAGTTCTTTGAGGATTTACGCATCATTGTGCTCTGATTTGATTAAAAGATGGGACCCAAAACAGCACCGTTGCAATGGTAACTTACAGGTGTTATTGCCTACCAAGATTAGGAGAGGTGTGGTAATGCTGGAGTGCTCTTCCCTGATTTTTAATAAATCTGTCAAGTTAAGGACTTTGTGAAGAGATGCATTTGGACATAGGAATCTTCAAGGCAAAGTAATAGGCATGAGGTTTCTGACTGACAAGACACATGTGAGTACATGCAAAATGTGCTCCTCCAGCTAAAAATAACATTTCTCCTGTCAACCACGATGCATCCACCCCCACAACACCACCCAGAAGAACACATTAACACCTTGGCTTTGCACGTAGCCCAATTCACAGCAGCCACAAGTGGTAGAGGGATCTGCACTCTGTGTGCATGCTGACAAATCATATGGCATAGCGAAGAACAGAGGAGTGAAACTGGGCTAGCAGAAGTTGACGCCTTATCATCACAGTCCCTTTGAGCATGCTGTAGGCTGACACCTCCACCAACCGAGTCATCTCCCCGATGCCAGGATGAAGAGCACGAGCCCACTATCCTGATTTAGCCTCCGAGGCTCAGCTCACCGCACTGAGAGGGTGCAGCGATGTAAAGAGACAAGGGAGCAGCCCAGGTGCACCAGCGAGGGGACAAGCAAAGAGTGCCCAACCACCGCTGCTCACAGCTGTGCTGCAGTGATGGTACAGTACAGACCAGTGATGTGCAATGTTTCTCCTGTTACGGATCCATAGTTTGTGCCCAATCCCAAAACCTGTAGATAATATTTCAAAACTAAGAGTGTTGGGTTGCAGATAGGCATCACCCTTAAAGAGGAATCTTGTGCTAACTAAGGTGCAAATCTGTCATACAGTCTGTATGTGGCACAGCAGTCAATATGTAATAAAGCACATGGACATTAAAGAGAAATAGAGAGAAATATCAACATCTTTTGCCCAAAGATTATTTCCCATGAAGATATGCTGTTGTGTTGTTGCTCATTTTTTCTTTTCTAAAAAACTGAAGCCTGCTGGAAATTGTTGAAGAAAATAAAAAATTACCATTCACAGAATCCCAAAATTGCAGGGGTGGGAAGGGACCTCAAGAAATCATCAAGTCCAACCCCTCTGAAGCAGTTCCCTGCAACAGGTCAAGTGGGTAGGCATCCAGATGGGTCTTGAATATCTCCATAGAAGGAGACTCTGCCACCTCTCTGGGCAGCCTGCTCCAGTGCTCCATCCCCCTTATCATAAAGAAGTTCTTCCACATGTCAGTATGGAATTTCCTATGTTCAAGTTTTAGGCCATTACTCCTTGTCCTATTGGTATGTACCACCAAGAAGAGCCTGGCCTCATCCATTTGCCTCCCACCTCCCTTTAGATATTTATCAACATTTATCAGATCCCCTCTCAGTGTTCTTTTCCCCAGGCTGAACAGACCCAGGCTCTACTAACATTCTCATCATAATTGCTAGGCCAGACAGTTAAAAATCATTATTGACAGTTCCGCATCAGTATAAATGTAGTTTGTGAAGTACAGTTCTTAAGTGGTGACATACATATAGATAGACAGATATAAACGATCTGGAAACAAATCAAAGCTAAAATATTGGCAGCTGACACAAGGGTGGTTCACGGACATGGAGGTCACTGTCAGTCCATTGCAGCCTTCCCCTGGACAGCATGAAGCTTTATTCAGAGGAGCTTTGCGGAAACCGGGGAGATTAAAAGAAGTAAGTTCCAATCTCTCCTTTAGCCAACAAGCACATGAGCCTATGTTCTCACTCTCAAAATTAAGCTCCTTTAACTCTCATCTAAGTTGAGCCTAGAGCTCTCACAGTGCTTCCCTTGTCCGAACTTCACCTGACTCCAGCAAAGCCGAGTAGGCTTTGGAGGGTGCTGAAGACATCTAGTCCTTCGCAGACAGTGCTTAGCGCTTAACAGGATCAGCCCCTTGGCGACTCGCATGCTGTCCATCACCTCAGATGCCTTACAGTTTTTAAATTATGCAATGCCCACCATATGTAATTAGCTAAGTAAGCTGCTTTCTCTTAACCTCAAATGTTTGTAATGCTTATAATCCCGGTTAGGTGTCTGTATAAAGGAGCTCCTTGTTAAGGGCAGAGGGGAGGAATTTTCTTCTATAAGGAAATTAGGCCCTTGACCGAGATGTAAAGCCGAAGGTTTGAAAGATTGCTTTTGTTTGGCCAGTGTTTGAGGGTCCCAGTGTTTAAATTAATCAGCAAGTCATCACTGGGCGCTAGCTGCCTATGCAAAGCAACTTGCCCATGGCGAGTCCTGTCCCAGTGAGCTATGGGCATCCTCGCTATTTTTCTTCCTAGTCCCTCCTTACTCCTGTTTCAGCAAGTTTAACACCAGCATCAAGTGCTTTCCTGGGATGAAGAACTGGGAGTTCGTCAGCCAAGATGGATTTTCGCTTTTGGCCCATTTCCCAATTGGGAAAGCTGAACGTTTCGATGCTCTTGGTGGTTCTTGTCATGTTTCTTTTGATTATTGACTTTGTGAGAAAGAGACGTCCCAGGAATTTCCCTCCTGGGCCACAGCTATTTCCTCTTGTGGGAACCATTGTGGATTTAAGGCAACCTCTCCATCTGGAGATGCAGAAGGTAAGACCTTCATGGACATTTCTCCTACTAATAATATTGTATCTTTTCAGTGATTTTTGTCACCTATCAAAGGCAAAACAAAGGTAACTTCTGGTTTACAAGCTGTATAATAACAATGTAGACGACTGTTGGGTTTATCCCTTGCTGCCACCCCCTCTTCCACAGGAGTTGGACAGTTTGATCAGAAGGAAATTTGTACCAGAGTACAAAGGAGGAAATTTGCACCAGAGTATAAAGAACATGTCTGCATGTTCCTCCTTTTTCTTCTCATTTTATCATTTTGTGCTTCAGCTCAGGAATGGTTTGGAGGGTGGGAAACAAATTGTTTGAGCAAAGAACATCACCTCTGAAAATTGTGTTGTCACTGTCTTTGCCCAGAGACCTGCAATTTGCACCAATACATCTGAAAGAAAGACTAAGGTCCAGAGTTCCAGAGTTAAACACCTCAGTGGCTGCTTCTTTGTCACAGAAAGAGGCAGTGATAGCTTTAGAAAGATTTCCAGAGCCAACAATAGAGTGATAGTTCATACACGTGGAGTACCTTCTTTGAGAAAGTGGGAAATAAGGTTCTGATGTGCTGGTTGCAAGTATCCTTCTGGTGTTTGACTTTTAGTCTCTTGCTTTGATTTAAAAGAGGACCCCATCTCATCTACCCCAGCCATTAGCAGGACTATCCCCCAGGGAACAGAGGCAGTACACTCAGGCCATTTTACCAACATATATAATTATTACTAATAAAATTAATCACATTCATTTACATGCAAGCACTGTCAAAGCTGCCCATTTGATCCCAGGCTCATTTCACTATCCACCATGTCAGTTCAGGGTGACCATGCATGACCTCTCCTGCAGAGTCACACTAAGAAGCGTGTGCACTGAATTCCTTGGCAAATGAGGACCCAAGAGAGGATATAATTGTCCTCTGCCCTTATACATCAGGGAGCTAAATGTTGAAGAGGAGAGGCTAATGCTCGCAATGTCCATGCAAGGAAAATGGCTATAAATTGGCTATAAATGCATTCAGGCTTAAAATTAGAGGAAGTTTTCTGAGCATCAGCAGTTGGAGCCACTTTCTAACTGTGACAGCTGGAGCAAGAAATCTCACTACTTACAAAGTTGGTGAAATAGTGTATGTGTTGTGCCTTGCTTTCAGCAGCAAGAGCCTGGTCTCAGTGACCCAGGTGGATCCTTTTCCTTCTGCACTCTTCCTGTGAAGAAGAGGGAAGGAGCAGGTGCCCATCAGTCATAAAGTCCCTGGATTCAAGTTAAATTGACACAACAGCCTGGTGAAAGCCAATATGCAAACCATGCCTGCCACACCACGGCTTACTAATATTGCTTGTGCCATCTCCAGCCTTTGTGAAATAGTTTAGGTTGAGTGGGACCTGTGGAAGACTTGGGTTTGGATTTTTCTTAAGCCCAACCCAGTGCTCCAAGTGGAAATAAACTCAAAGTTAGATCCCAGGTCTTGTCTATGTTCATTTAGAAACTCTCCATCTTCTTGCTCTCAGAGAGTGATGGGCTCTCTTTCAG
Seq C2 exon
CTTACTGCGAGGTATGGAAACATCTTCAGCGTGCAGTTTGGAGGTCTGACTTTTGTGGTGGTCAGTGGGTACCAGATGGTGAGAGAAGCCCTTGTCCACCAGGCTGAAATATTTGCAGATCGACCACATATTCCACTTCTCCAAGAAATTTTTAGAGGCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011413:ENSGALT00000018621:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(18.7=23.0)
A:
NA
C2:
PF0006717=p450=FE(12.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]