MmuINT0045037 @ mm10
Intron Retention
Gene
ENSMUSG00000066097 | Cyp2j11
Description
cytochrome P450, family 2, subfamily j, polypeptide 11 [Source:MGI Symbol;Acc:MGI:2140224]
Coordinates
chr4:96345079-96348662:-
Coord C1 exon
chr4:96348352-96348662
Coord A exon
chr4:96345242-96348351
Coord C2 exon
chr4:96345079-96345241
Length
3110 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
3' ss Seq
ACTATTGAAATGTTTTTCAGTTT
3' ss Score
6.36
Exon sequences
Seq C1 exon
GATAGAAAGGCAGGCTTGGTTAGCCACGAACAAGCTGGAACTTAGCAGAGGGCTGTCAGTACTGTCAGGGGACTGGCACAGCTCAGACTCTCACCATGCTTGCTATTGCAACTTGCCTGGTGGCTAACATCTGCTCAGCAATCCATCTCTGGACTCTGCTTCTCACTCTTCTTACCTTGCTGCTCCTTGCTGACTACCTCAAAAACAGGCGCCCCAAGAACTATCCTCCAGGGCCCAGGCGCCTGCCATTTGTGGGCAACTTGTTCCAGTTTGATTTAGATGTGTCACGTCTGCATTTGGGGATCCAGCCG
Seq A exon
GTAAGAAAGGGAGAGGGGTTCTGGTTGTGCCATGACCTGATACTGACCTGTTGAAACAGGGGCAGAAGGATATGGTGACAGGCTGATACTGCCTGTCTGCTAACCTAGACAGTAAAGCTAGTTTCTAATCTGGGTCTTCATGTGAGAGATATGTTTAATGCCAAAAGGTTCATTTTATTATCTTTGCATAAACAAATTCGGTGTTATTTCATTATGTTCAGACAATACATTATGCATGATTTCAATTGTTTTAAGTATATTAAGGTTGATGGATGAGTTGATAGTTCATCTTGATAAATAAATTCTGTTGCTATAACAAATGTGTAAGCAAGTGCCCATATGCTTAGTATTTTAAGCACTCTAGCAGGAAACACACACACACACACACACACACACACACACACAAACCTGTGCTCTTTATCAAACTTTCCATAATATGATTTTCTCTTATAGATACTTATTTATTCTATAGTGTGTTGGCTGCTTCTCTACTGATTTTATCAACTAGAGAAAGGTTCACTGATGTCTCCAGTTCCATTAGGAGTTTGCCTGTTTTTCTCAGCTTTCTCTACTACCCTCCTCCCGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTATATGTCTGAGATCAATAGGTGGGGGGGTTGCAATGACCAACTTTCTTTGTAATACTGTTTTTTATCTGTAGTAATTTCCTATGCCCTGTGCCTTGACAGAGTATATTTGGGCCACATTTATAATTATCATTCATACTTACTGGTCCATTATATATTATTCCTATCCCTTAAAATTAGCTACAAAGAGTAGATCATTTTATGTACTTTATTGTTATATAAGGAATATTACTCCTTAATTTTATTACTGTCTTTTGTATTTCTGTTTCTTTCCTCTCCCATTTCCCTTTTTCTGTGGGTTTTTGAATGCAGAACACTTTTCAAGTAGTCATCTTCACTCTTTCCAGATATTTCTTTAATCCTCTAAACCACAGCTGCTTTGTGTTATGCAATAGGCACATTCAGCTGAAGAGACTTACTAATACCGCTCTCTTCAGGAATTAAAGTGACTACAAGCATAGAGTGTCCCTGTCTCTCCTGTAGGTACAGCTGTCTCAGGTGTAGTCTCCACACACACTGAGAACCATATCAGACTCAAATCTCGCAAGTGTCCTGTGCAACTGTAATTCAAAGACAGAAAAGTCTCCTGCCTTTGCTCCTTACTCCTGCTCCCATGGCCCTGTCTTTTTTCTAACCCTTCAAGTTCACAGCTTTCTTTCTGACGAAAAGCACTTCCTTTCTCCATTCCTTCAGAGGGGGCACAGCAGAACGAAATATCTTTTCCCACCTCAGAATGATTCTCCCCTCCATGCCCACACTGGCTTTTCCCTTTTTATGGGACACTAGGTTGATGAAATGCTTCCCTTAACCCTTTTACATAGTCCTGCTTTGTTCTGGCCTTTGTAGTTTGCCCATAAGTGATACAACATTTATTTTTCTCTCTGCTTTCAAGAGATTTCCTGTTTTTGATTAAAATTGATTGTGGTGATTTTGCATGATCAAGCTTGTGGCTTTATGTTGTTGAGTTTTTTGTAGCAGGGTTGTATTTTGCACCACTGGGGAGTTTCTACCATTCTTAAAGTATATTCTCATCTACACTGTCTCTTTCCTGGTTTGGTTGACAGAGGTACAGCTGTAAATCTCTGTGAGTGTGGTTGTGTTAAATCAGTAAGGTTTTCTCTTGACTGTCAACATGCATTTGTGTCTCTGACCCTTTGAACACAAAGCCCATTCAGTTTTCAGAGATGCTGTGGGTGGCTGGGACCAAACAAAATGCTTCTCCCAGTGCTTCTCTTATTCTTCCTCACAGGATCCTGTGAGGGAAGGGGTGAATTTTAACACTTTCATGGCTGGGAGCTTGAGACTTGAAAGATCACAACTGCCTAAACAGCCACAGTTATTGATCTATTAAAGTTATTATAAAGTTATTATAGTTATTGAGCCTATGTGCTTCCATCACTACAGATATTCAGAGATGTCTCCATTCTTAACCTACACCCTTTATTCCATTACCCTATCTATTTATACAGTGGTTCTGAACCTCTTGACCTCATTGTGGTCTTAGATCAGATCTCTTTCACAATAGATATTTACATTGCAATTGATAACACTAGAAAAATTATAGTTATAAAGTAACAACAAAACAATTTTATGGTTGGGAATCTCCATACCATGAGGAACTCTATTACATGGTCACATTTTTAGGAGGTTGATATCATACATTTTTCTAAAGCTTTCCATGCTTACTACAACAGACTTGTACAGAGACAGCTTGAACTCCCCAAGGATTGATAACCCTATTTCCCTGCTTTCACTAGACCAGGTTAGAGACCTTGCTTTCTTTAAGACATTTATAAACTCATGTAGTCTAGGGAAACATTGGTGATCACGGAGTTCTTAATGGAGAAAGCATGAATAAAGGTATAAGCAGAAACTTCACATTATAAACTGAATTAAAATTTGATAGAGTAGCGATGAGGGAGAAACTTATGACACAATGGTAACTTTTCCTCACACAGATGTGCAGACTCCCCTCCATGTTTGTCTCATTATTTATACATGTACATCTCATGTCTGGCTGATGCTGTGGAGAGGGCCATATTCCCCAGACAAACAGGCTGTTGATTTTGTAAGATGTCCATGAAAGCTGTACAAAACATTCACACACTTTTCTCAGCCTTTGTCAGGTCATGAGTACCTGAGCCTCTGCCTTTGCTGAGACTTTAGAATTCTTCAGGTAGAGACCCAGATAATTTGTTGACATTTACATCCTTAAACCTTCCTTTAGGAGTACATGATAGAATACTTCTAATTTCATACTCACCTATACCATTGACATTTTATATAGTATTTTCCATTTTAATTGAAATTGAGTTTAGTTCAGAGGAGGAAAACATTTTCAGAAACATTTCCACAGACTAAGAAGAATTCATCCATTCACATTAAAACAGAGACCCCTCAACACAAGTCCACCAAACACACATCTCTCTTAGACCCCTTAACACACTGAAACAGGTACATTTAAATATGACTATTGAAATGTTTTTCAG
Seq C2 exon
TTTGTGAAGAAGTATGGAAACGTAATTAGCGTGAATTTTGGTTACATTTCTTCAGTGATCATAAGTGGACTGCCCTTAATCAAAGAAGCTATCACTGGCATGGAACAAAACTTTTTGAAACGCCCCAGTTTAGCTGCAAGGCAACATGTATTTAAAAATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066097:ENSMUST00000015368:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(6.1=38.9)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types