DreALTA0009352-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000074909 | dcaf17
Description
ddb1 and cul4 associated factor 17 [Source:ZFIN;Acc:ZDB-GENE-071008-1]
Coordinates
chr9:3532374-3532880:-
Coord C1 exon
chr9:3532793-3532880
Coord A exon
chr9:3532455-3532457
Coord C2 exon
chr9:3532374-3532454
Length
3 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TGAATTCTTCTTCCTCTCAGCAG
3' ss Score
5.71
Exon sequences
Seq C1 exon
CATTCTCAAGATCATGGCGGAAACAGGATGTGACTGGAAGTATGAGATCATCACAGATTTCTCCATCACCGCTGCTCGTGACAGTAAT
Seq A exon
CAG
Seq C2 exon
GCCTCTCAGGTGATTGTGACCTCTTCTGGCCGTACAGTTAAAAGGAGATTTCAGATGTTAGACGATGACCCTGCACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074909-13-14,13-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCGGAAACAGGATGTGAC
R:
CGGCCAGAAGAGGTCACAATC
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]