HsaALTA1018488-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
Coordinates
chr2:171476860-171478070:+
Coord C1 exon
chr2:171476860-171476950
Coord A exon
chr2:171477987-171478011
Coord C2 exon
chr2:171478012-171478070
Length
25 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TATTTCTTTCCATATGATAGAAT
3' ss Score
4.23
Exon sequences
Seq C1 exon
AGTTTTGAAGCTAACTGAAATAGAAAATAATAGTTCTCAGCATCAGATCTCTGAAGATTTTGTCATTTTGGCCAACAGGGAGAACCATAAA
Seq A exon
AATGAAAATGTACTCACTGTTACAG
Seq C2 exon
CTTCTGGACGGGTGGTAAAAAAAAGTTTTAACCTTCTGGATGATGACCCAGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827-32-37,32-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTCAGCATCAGATCTCTG
R:
TCTTGTTCTGGGTCATCATCCA
Band lengths:
118-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains