MmuALTA1033309-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000041966 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:MGI Symbol;Acc:MGI:1923013]
Coordinates
chr2:71086539-71087398:+
Coord C1 exon
chr2:71086539-71086626
Coord A exon
chr2:71087315-71087339
Coord C2 exon
chr2:71087340-71087398
Length
25 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CACCCCCGCCCCCCCATCAGAAG
3' ss Score
5.64
Exon sequences
Seq C1 exon
AGTCTTGAAGCTAAGTGAGGTAGAAAATGATAGTTCTCAGCATCAGATCTCTGAAGATTTTGTCATTTGGGCTAAAAGAGAAGACAGA
Seq A exon
AAGGAAAATTTAATCACCGTTACAG
Seq C2 exon
CTTCTGGACGTGTGGTGAAAAGAAATGTCAGCCTTCTGGATGATGACCCAGAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041966-33-38,33-37-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATAGTTCTCAGCATCAGATCTCT
R:
TGGGTCATCATCCAGAAGGCT
Band lengths:
112-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types