DreALTA0012489-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32760517-32764421:-
Coord C1 exon
chr5:32764362-32764421
Coord A exon
NA
Coord C2 exon
chr5:32760517-32760735
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CATCCCTTCCTTTCCTCAAGGTG
3' ss Score
9.99
Exon sequences
Seq C1 exon
ATTGTATTCGGATCCCCTACGGCACCAAGCTTTCCCTCTACATGTCTAAAGACTCTGAAG
Seq A exon
NA
Seq C2 exon
GTGAAACTCAATCAAAACACATCTATAAGATCCCTCTGAGTAACCTAGTTGGAAGGAGCATAGAAAGGCCCCTCAAGTCTCCTCTGGTCAATAAAGTGCTCACGGCACCGGCCCCCAGCATGACCGGGCCTGCGCCCATGATCGGCAGCACCACCTCCCTCTCGCTGTCTCGCATGGAGATCAAAGAAATTGCCAGCCGCACACGAAAAGAGCTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-30-37,30-36-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.574
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCGGATCCCCTACGGCAC
R:
GACCAGAGGAGACTTGAGGGG
Band lengths:
145-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]