DreALTA0013046-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000096651 | gpr108
Description
G protein-coupled receptor 108 [Source:ZFIN;Acc:ZDB-GENE-121214-129]
Coordinates
chr1:58371739-58372025:+
Coord C1 exon
chr1:58371739-58371822
Coord A exon
chr1:58371904-58371910
Coord C2 exon
chr1:58371911-58372025
Length
7 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TCTCTTCTATGTGTTTGCAGTTG
3' ss Score
9.73
Exon sequences
Seq C1 exon
ATCGTGTGTTATATCTACTTCACGCGCATCATTGCTTTAGTGCTGAAGGTCATGGTGCCGTTCCAGTGGCAGTGGTGTCAAGAG
Seq A exon
TTGTTAG
Seq C2 exon
TGGAGGTTTCTACTTTGATTTTCTTTGTCTTGACGGGATTCAAGTTCCGACCGGCGTCCAATAATCCGTACCTGCAGCTGCCTCAGGACGAGGAGGACCTGGAGATGGATGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096651-19-23,19-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(10.3=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=PD(9.1=58.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGCAGTGGTGTCAAGAG
R:
GTACGGATTATTGGACGCCGG
Band lengths:
92-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]