RnoALTA0017039-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9713381-9713691:+
Coord C1 exon
chr9:9713381-9713464
Coord A exon
NA
Coord C2 exon
chr9:9713570-9713691
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCCCGTGCTCCGGCCCCCAGCTC
3' ss Score
7.17
Exon sequences
Seq C1 exon
GTCATCTGCTATATCTACTTTACGCGCATCATCGCCATTCTGCTTCGAGTGGCAGTGCCCTTCCAGTGGCAGTGGCTGTACCAG
Seq A exon
NA
Seq C2 exon
CTCTTGGTGGAGAGTTCCACCCTGGCCTTCTTCGTGCTCACCGGCTACAAGTTCCAGCCGGCGGGGGACAACCCATACCTGCAGCTGCCACAGCAGGAGGATGAGGAGGACGTACAGATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128-26-22,26-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(9.3=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=PD(8.3=55.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCCATTCTGCTTCGAGTG
R:
CTGGAACTTGTAGCCGGTGAG
Band lengths:
111-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]