MmuALTA1002581-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57235929-57236239:-
Coord C1 exon
chr17:57236156-57236239
Coord A exon
NA
Coord C2 exon
chr17:57235929-57236047
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCCCATGCCCCGCCCCCAGCTC
3' ss Score
7.61
Exon sequences
Seq C1 exon
GTCATCTGCTATATCTACTTTACACGTATCATCGCCATTCTGCTGCAAGTAGCAGTGCCCTTCCAGTGGCAGTGGCTGTACCAG
Seq A exon
NA
Seq C2 exon
CTCTTGGTGGAGAGTTCCACACTGGCCTTCTTCGTGCTCACTGGCTACAAGTTCCAGCCGGCTGGGGACAACCCATACCTGCAGCTGCCACAGGAGGATGAGGAGGACGTACAGATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823-27-28,27-27-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(9.3=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=PD(8.3=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTAGCAGTGCCCTTCCAG
R:
CAGCTGCAGGTATGGGTTGTC
Band lengths:
126-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types