DreALTA0013998-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000012381 | hsc70
Description
heat shock cognate 70 [Source:ZFIN;Acc:ZDB-GENE-040426-1221]
Coordinates
chr15:37941134-37943043:-
Coord C1 exon
chr15:37942838-37943043
Coord A exon
chr15:37941236-37941286
Coord C2 exon
chr15:37941134-37941235
Length
51 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
3' ss Seq
TGATCTTGTTGTCTTTTTAGACT
3' ss Score
9.03
Exon sequences
Seq C1 exon
ATGCCAAGCGCCTGATTGGACGACGCTTTGATGACCCAGTGGTTCAATCTGACATGAAGCACTGGCCCTTTAAGGTAATCAGTGACGGCAGCAAGCCCAAAATGGAAGTGGAGTACAAAGGAGAGATAAAGACTTTCTTCCCTGAAGAGGTGTCCTCCATGGTCCTCACTAAGATGAAGGAGATCTCCGAAGCTTACCTTGGCAAG
Seq A exon
ACTGTATCAAATGCAGTGATTACGGTGCCTGCTTACTTTAATGACTCCCAG
Seq C2 exon
CGCCAAGCCACCAAAGATGCTGGAACCATCGCTGGCCTTAATGTCCTTCGCATCATCAACGAACCAACAGCAGCTGCTATTGCATATGGATTGGACAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012381-3-6,3-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(11.2=100)
A:
NA
C2:
PF0001215=HSP70=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCTCCATGGTCCTCACT
R:
AGCTGCTGTTGGTTCGTTGAT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]