DreALTA0017106-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000045401 | mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:ZFIN;Acc:ZDB-GENE-041114-176]
Coordinates
chr24:17067383-17069356:+
Coord C1 exon
chr24:17067383-17067464
Coord A exon
chr24:17069149-17069154
Coord C2 exon
chr24:17069155-17069356
Length
6 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
GTTTGTCTGTCTGTGTTTAGGAA
3' ss Score
11.13
Exon sequences
Seq C1 exon
GCTTTTCACTGAACAACACCGGCAGATTCTCCTCCATCAGCATCAACTACAGCAGCTTTTCGGCTCCCAGCAGCCCACACCG
Seq A exon
GAACAG
Seq C2 exon
CAGCAGGTTCTGCTCTATCAGTTAATGCAACAACAACAGCAGCAGCAGCAACAACAGCAGCAGAATGACATTCAGTTCCAGCAGCTGCCAATCAACAGCCTCCTGCCCGGCAATCAGCCAACCACCAGCACAAACCCCTTCCTAGCCCACCACAATGACAACAACACTCCTAAAGCTGGAGTTAATACTGCAGCCATCAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045401-40-46,40-44-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.628 A=NA C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGATTCTCCTCCATCAGC
R:
CTGCTGCTGTTGTTGTTGCAT
Band lengths:
107-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]