RnoALTA0024227-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84973851-84977590:+
Coord C1 exon
chr17:84973851-84973947
Coord A exon
chr17:84977393-84977398
Coord C2 exon
chr17:84977399-84977590
Length
6 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
CTTGTGTCTCATTGCTGAAGGAG
3' ss Score
4.85
Exon sequences
Seq C1 exon
TGCCTCGGGCCTGGGGCTGCTGTCGGACCAGCAGCGACAGATGTTCCTCCAGCAGCAGCAGTTCCAGCAGCTCTTGAACTCCCAGCAGCTCACGCCG
Seq A exon
GAGCAG
Seq C2 exon
CACCAGGCCTTCCTGTACCAGCTGATGCAGCAGCAGCACCATCCCCCCGAGCTTCAGCAGATGCAGCTCCCAGGGCCCACGCAGATCCCCATCAACAACCTCCTGGCAGGCCCTCCGGCGCCCCCACTCCACACGGCGACCACCAACCCCTTCCTCACCATCCACGGGGACAGCACAAGCCAGAAAGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249-46-52,46-51-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=0.943
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCTTGAACTCCCAGCAG
R:
GGGAGCTGCATCTGCTGAAG
Band lengths:
101-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]