Special

MmuALTA0011046-3/4 @ mm10

Alternative 3'ss

Gene
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18207783-18208947:+
Coord C1 exon
chr2:18207783-18207879
Coord A exon
chr2:18208750-18208864
Coord C2 exon
chr2:18208865-18208947
Length
115 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TCATCCCACTTTTTCTGAAGGAA
3' ss Score
6.72
Exon sequences
Seq C1 exon
TGCCTCGGGACTAGGGCTGCTGTCGGACCAGCAGAGACAGATGTTTATCCAGCAGCAGCAGTTCCAGCAGCTGTTAAACTCCCAGCAGCTCACACCC
Seq A exon
GAACAGCATCAGGCCTTCCTATACCAGCTGATGCAGCAGCAGCACCACCCGCCTGAGCTCCAGCAGCTGCAGCTCCCGGGACCCACGCAGATCCCCATCAACAATCTCCTTGCAG
Seq C2 exon
GTGCTCAGGCGCCTCCACTCCACACAGCTACCACCAACCCCTTCCTCACCATCCACGGGGACAGCACGAGCCAGAAGGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743-78-102,78-101,78-100,78-99-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.212 A=NA C2=0.894
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCGGGACTAGGGCTG
R:
GTGACCTTCTGGCTCGTGC
Band lengths:
178-293
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types