GgaALTA0004121-3/4 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007928 | MLLT10
Description
NA
Coordinates
chr2:17836050-17837099:-
Coord C1 exon
chr2:17836997-17837099
Coord A exon
chr2:17836127-17836256
Coord C2 exon
chr2:17836050-17836126
Length
130 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
3' ss Seq
CCCCCATCTTATTCCTCAAGGAA
3' ss Score
7.18
Exon sequences
Seq C1 exon
TGCCTCAGGACTGGGATTACTTCCTGACCAACAGAGACAACTTCTACTCCATCAACAGCACCAGCAATTCCAGCAATTACTAAGTACTCAGCAACTCACATCG
Seq A exon
GAACAACATCAGGCCCTTCTGTATCAGCTAGTACAGCAGCACCACCACCACCAACACCACCATCAGTCTGAAGTACAGCAACTGCAGATTACTGGAGGAGCACAGATACCCATAAACAACTTACTTTCAG
Seq C2 exon
GCACGCAGGCATCACCACTTAATGCAGCTTCTACCAACCCTTTCCTGACAATTCATGGAGATAATGCAGCTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928-33-48,33-47,33-46,33-45-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.831
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCAGGACTGGGATTACT
R:
TCTGAGCTGCATTATCTCCATGA
Band lengths:
178-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]