HsaALTA0005252-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000078403 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr10:21735139-21740153:+
Coord C1 exon
chr10:21735139-21735235
Coord A exon
chr10:21739763-21740029
Coord C2 exon
chr10:21740030-21740153
Length
267 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CCACCTTGATTTCTCTTAAGCTG
3' ss Score
4.93
Exon sequences
Seq C1 exon
TGCCTCAGGACTAGGATTACTTTCTGACCAGCAACGACAAATACTTATTCATCAACAGCAGTTTCAGCAGTTGTTAAATTCTCAACAGCTCACACCA
Seq A exon
CTGCTGCACTTCCTGATTGATCATCACGGATAACCTAATAGAGCTCTCCTATGTGTGTCCTGTTTTGAAAATAAGCTGTTTGCTGAAGATACTGACATTTTATAGTAGATGGTTATTATCTAGTGCAGCATATTTTTCTAGATGAGATACTTGTTTTCTTTCTTTGCAAATATCTAATATTAAAGGAAAGAAAACATAAGGCAGCTCATCTGACTGCTGAATTCCGTGCTTGGGAACTCATTTTCTCTCACATGTTTTTTGCCTAAG
Seq C2 exon
GAACAACATCAAGCCTTTTTGTATCAGTTAATGCAACATCACCACCAGCAGCACCACCAACCTGAACTTCAGCAGCTGCAGATCCCTGGACCAACACAAATACCCATAAACAACCTTCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078403-105-108,105-107-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.957
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCAGGACTAGGATTACT
R:
TGCAAGAAGGTTGTTTATGGGT
Band lengths:
220-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development